--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/predict_augustus/Genus_species.discrepency.report.txt	Mon Oct 04 19:39:38 2021 +0000
@@ -0,0 +1,139 @@
+Discrepancy Report Results
+
+Summary
+DISC_PROTEIN_NAMES:All proteins have same name "hypothetical protein"
+DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same)
+DISC_FEATURE_COUNT:gene: 18 present
+DISC_FEATURE_COUNT:CDS: 18 present
+DISC_FEATURE_COUNT:mRNA: 18 present
+DISC_COUNT_NUCLEOTIDES:4 nucleotide Bioseqs are present
+JOINED_FEATURES:32 features have joined locations.
+NO_ANNOTATION:2 bioseqs have no features
+DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
+ONCALLER_COMMENT_PRESENT:4 comment descriptors were found (all same)
+MISSING_GENOMEASSEMBLY_COMMENTS:4 bioseqs are missing GenomeAssembly structured comments
+MOLTYPE_NOT_MRNA:4 molecule types are not set as mRNA.
+TECHNIQUE_NOT_TSA:4 technique are not set as TSA
+MISSING_STRUCTURED_COMMENT:4 sequences do not include structured comments.
+MISSING_PROJECT:22 sequences do not include project.
+DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
+
+
+Detailed Report
+
+DiscRep_ALL:DISC_PROTEIN_NAMES::All proteins have same name "hypothetical protein"
+
+DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same)
+DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::4 sources have 'Genus species' for taxname
+DiscRep_ALL:DISC_FEATURE_COUNT::gene: 18 present
+DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 18 present
+DiscRep_ALL:DISC_FEATURE_COUNT::mRNA: 18 present
+DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::4 nucleotide Bioseqs are present
+genome:sample (length 215740)
+genome:sample2 (length 2030)
+genome:sample3 (length 2100)
+genome:sample4 (length 7560)
+
+DiscRep_ALL:JOINED_FEATURES::32 features have joined locations.
+DiscRep_SUB:JOINED_FEATURES::32 features have joined location but no exception
+genome:CDS	hypothetical protein	(sample:2126-2199, 2258-3224, 3284-3490, 3549-3863)	FUN_000002
+genome:mRNA	hypothetical protein	(sample4:2126-2199, 2258-3224, 3284-3490, 3549-3863)	FUN_000017
+genome:CDS	hypothetical protein	(sample4:2126-2199, 2258-3224, 3284-3490, 3549-3863)	FUN_000017
+genome:mRNA	hypothetical protein	(sample:2126-2199, 2258-3224, 3284-3490, 3549-3863)	FUN_000002
+genome:CDS	hypothetical protein	(sample4:c5494-4930, c4759-4248)	FUN_000018
+genome:mRNA	hypothetical protein	(sample4:c5494-4930, c4759-4248)	FUN_000018
+genome:mRNA	hypothetical protein	(sample:c5802-5797, c5539-4883)	FUN_000003
+genome:CDS	hypothetical protein	(sample:c5802-5797, c5539-4883)	FUN_000003
+genome:CDS	hypothetical protein	(sample:c10557-10549, c10462-8696)	FUN_000004
+genome:mRNA	hypothetical protein	(sample:c10557-10549, c10462-8696)	FUN_000004
+genome:mRNA	hypothetical protein	(sample:c15214-15209, c14648-14247)	FUN_000005
+genome:CDS	hypothetical protein	(sample:c15214-15209, c14648-14247)	FUN_000005
+genome:CDS	hypothetical protein	(sample:c21705-21700, c21515-19533)	FUN_000006
+genome:mRNA	hypothetical protein	(sample:c21705-21700, c21515-19533)	FUN_000006
+genome:CDS	hypothetical protein	(sample:c35679-35675, c35655-35648, c35594-34843)	FUN_000007
+genome:mRNA	hypothetical protein	(sample:c35679-35675, c35655-35648, c35594-34843)	FUN_000007
+genome:CDS	hypothetical protein	(sample:40223-40396, 40659-41234)	FUN_000008
+genome:mRNA	hypothetical protein	(sample:40223-40396, 40659-41234)	FUN_000008
+genome:mRNA	hypothetical protein	(sample:41267-41274, 41437-41444, 41707-42107)	FUN_000009
+genome:CDS	hypothetical protein	(sample:41267-41274, 41437-41444, 41707-42107)	FUN_000009
+genome:CDS	hypothetical protein	(sample:87202-87207, 88054-88320)	FUN_000010
+genome:mRNA	hypothetical protein	(sample:87202-87207, 88054-88320)	FUN_000010
+genome:CDS	hypothetical protein	(sample:94727-94732, 94873-95016, 95449-95583)	FUN_000011
+genome:mRNA	hypothetical protein	(sample:94727-94732, 94873-95016, 95449-95583)	FUN_000011
+genome:CDS	hypothetical protein	(sample:133134-133142, 133209-134539, 134668-135510, 135569-136346)	FUN_000012
+genome:mRNA	hypothetical protein	(sample:133134-133142, 133209-134539, 134668-135510, 135569-136346)	FUN_000012
+genome:CDS	hypothetical protein	(sample:144294-144551, 149012-149244, 149367-149588, 149654-149897, 149952-150112, 150174-150248, 151966-152072, 152314-152429, 152496-152751, 153651-159010, 159150-164491, 167135-168360, 168722-169208, 169350-169416)	FUN_000013
+genome:mRNA	hypothetical protein	(sample:144294-144551, 149012-149244, 149367-149588, 149654-149897, 149952-150112, 150174-150248, 151966-152072, 152314-152429, 152496-152751, 153651-159010, 159150-164491, 167135-168360, 168722-169208, 169350-169416)	FUN_000013
+genome:CDS	hypothetical protein	(sample:192049-192067, 193549-193658, 194041-194455, 194518-194669)	FUN_000014
+genome:mRNA	hypothetical protein	(sample:192049-192067, 193549-193658, 194041-194455, 194518-194669)	FUN_000014
+genome:CDS	hypothetical protein	(sample:c210553-210548, c210474-209044)	FUN_000015
+genome:mRNA	hypothetical protein	(sample:c210553-210548, c210474-209044)	FUN_000015
+
+DiscRep_ALL:NO_ANNOTATION::2 bioseqs have no features
+genome:sample2 (length 2030)
+genome:sample3 (length 2100)
+
+DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
+
+DiscRep_ALL:ONCALLER_COMMENT_PRESENT::4 comment descriptors were found (all same)
+genome:sample:"Annotated using 1.8.7"
+genome:sample2:"Annotated using 1.8.7"
+genome:sample3:"Annotated using 1.8.7"
+genome:sample4:"Annotated using 1.8.7"
+
+DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::4 bioseqs are missing GenomeAssembly structured comments
+genome:sample (length 215740)
+genome:sample2 (length 2030)
+genome:sample3 (length 2100)
+genome:sample4 (length 7560)
+
+DiscRep_ALL:MOLTYPE_NOT_MRNA::4 molecule types are not set as mRNA.
+genome:sample (length 215740)
+genome:sample2 (length 2030)
+genome:sample3 (length 2100)
+genome:sample4 (length 7560)
+
+DiscRep_ALL:TECHNIQUE_NOT_TSA::4 technique are not set as TSA
+genome:sample (length 215740)
+genome:sample2 (length 2030)
+genome:sample3 (length 2100)
+genome:sample4 (length 7560)
+
+DiscRep_ALL:MISSING_STRUCTURED_COMMENT::4 sequences do not include structured comments.
+genome:sample (length 215740)
+genome:sample2 (length 2030)
+genome:sample3 (length 2100)
+genome:sample4 (length 7560)
+
+DiscRep_ALL:MISSING_PROJECT::22 sequences do not include project.
+genome:sample (length 215740)
+genome:ncbi:FUN_000001-T1 (length 124)
+genome:ncbi:FUN_000002-T1 (length 520)
+genome:ncbi:FUN_000003-T1 (length 220)
+genome:ncbi:FUN_000004-T1 (length 591)
+genome:ncbi:FUN_000005-T1 (length 135)
+genome:ncbi:FUN_000006-T1 (length 662)
+genome:ncbi:FUN_000007-T1 (length 254)
+genome:ncbi:FUN_000008-T1 (length 249)
+genome:ncbi:FUN_000009-T1 (length 138)
+genome:ncbi:FUN_000010-T1 (length 90)
+genome:ncbi:FUN_000011-T1 (length 94)
+genome:ncbi:FUN_000012-T1 (length 986)
+genome:ncbi:FUN_000013-T1 (length 4717)
+genome:ncbi:FUN_000014-T1 (length 231)
+genome:ncbi:FUN_000015-T1 (length 478)
+genome:sample2 (length 2030)
+genome:sample3 (length 2100)
+genome:sample4 (length 7560)
+genome:ncbi:FUN_000016-T1 (length 124)
+genome:ncbi:FUN_000017-T1 (length 520)
+genome:ncbi:FUN_000018-T1 (length 358)
+
+DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
+DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
+DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::4 Molinfos are missing field technique
+genome:sample (length 215740)
+genome:sample2 (length 2030)
+genome:sample3 (length 2100)
+genome:sample4 (length 7560)
+