Mercurial > repos > iuc > funannotate_annotate

diff test-data/predict_augustus/Genus_species.tbl @ 0:a5baa4ff168d draft

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"planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
author iuc
date Mon, 04 Oct 2021 19:39:38 +0000
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/predict_augustus/Genus_species.tbl	Mon Oct 04 19:39:38 2021 +0000
@@ -0,0 +1,282 @@
+>Feature sample
+1	215740	REFERENCE
+			CFMR	12345
+1466	1092	gene
+			locus_tag	FUN_000001
+1466	1092	mRNA
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000001-T1_mrna
+			protein_id	gnl|ncbi|FUN_000001-T1
+1466	1092	CDS
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000001-T1_mrna
+			protein_id	gnl|ncbi|FUN_000001-T1
+2126	3863	gene
+			locus_tag	FUN_000002
+2126	2199	mRNA
+2258	3224
+3284	3490
+3549	3863
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000002-T1_mrna
+			protein_id	gnl|ncbi|FUN_000002-T1
+2126	2199	CDS
+2258	3224
+3284	3490
+3549	3863
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000002-T1_mrna
+			protein_id	gnl|ncbi|FUN_000002-T1
+5802	4883	gene
+			locus_tag	FUN_000003
+5802	5797	mRNA
+5539	4883
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000003-T1_mrna
+			protein_id	gnl|ncbi|FUN_000003-T1
+5802	5797	CDS
+5539	4883
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000003-T1_mrna
+			protein_id	gnl|ncbi|FUN_000003-T1
+10557	8696	gene
+			locus_tag	FUN_000004
+10557	10549	mRNA
+10462	8696
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000004-T1_mrna
+			protein_id	gnl|ncbi|FUN_000004-T1
+10557	10549	CDS
+10462	8696
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000004-T1_mrna
+			protein_id	gnl|ncbi|FUN_000004-T1
+15214	14247	gene
+			locus_tag	FUN_000005
+15214	15209	mRNA
+14648	14247
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000005-T1_mrna
+			protein_id	gnl|ncbi|FUN_000005-T1
+15214	15209	CDS
+14648	14247
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000005-T1_mrna
+			protein_id	gnl|ncbi|FUN_000005-T1
+21705	19533	gene
+			locus_tag	FUN_000006
+21705	21700	mRNA
+21515	19533
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000006-T1_mrna
+			protein_id	gnl|ncbi|FUN_000006-T1
+21705	21700	CDS
+21515	19533
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000006-T1_mrna
+			protein_id	gnl|ncbi|FUN_000006-T1
+35679	34843	gene
+			locus_tag	FUN_000007
+35679	35675	mRNA
+35655	35648
+35594	34843
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000007-T1_mrna
+			protein_id	gnl|ncbi|FUN_000007-T1
+35679	35675	CDS
+35655	35648
+35594	34843
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000007-T1_mrna
+			protein_id	gnl|ncbi|FUN_000007-T1
+40223	41234	gene
+			locus_tag	FUN_000008
+40223	40396	mRNA
+40659	41234
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000008-T1_mrna
+			protein_id	gnl|ncbi|FUN_000008-T1
+40223	40396	CDS
+40659	41234
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000008-T1_mrna
+			protein_id	gnl|ncbi|FUN_000008-T1
+41267	42107	gene
+			locus_tag	FUN_000009
+41267	41274	mRNA
+41437	41444
+41707	42107
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000009-T1_mrna
+			protein_id	gnl|ncbi|FUN_000009-T1
+41267	41274	CDS
+41437	41444
+41707	42107
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000009-T1_mrna
+			protein_id	gnl|ncbi|FUN_000009-T1
+87202	88320	gene
+			locus_tag	FUN_000010
+87202	87207	mRNA
+88054	88320
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000010-T1_mrna
+			protein_id	gnl|ncbi|FUN_000010-T1
+87202	87207	CDS
+88054	88320
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000010-T1_mrna
+			protein_id	gnl|ncbi|FUN_000010-T1
+94727	95583	gene
+			locus_tag	FUN_000011
+94727	94732	mRNA
+94873	95016
+95449	95583
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000011-T1_mrna
+			protein_id	gnl|ncbi|FUN_000011-T1
+94727	94732	CDS
+94873	95016
+95449	95583
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000011-T1_mrna
+			protein_id	gnl|ncbi|FUN_000011-T1
+133134	136346	gene
+			locus_tag	FUN_000012
+133134	133142	mRNA
+133209	134539
+134668	135510
+135569	136346
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000012-T1_mrna
+			protein_id	gnl|ncbi|FUN_000012-T1
+133134	133142	CDS
+133209	134539
+134668	135510
+135569	136346
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000012-T1_mrna
+			protein_id	gnl|ncbi|FUN_000012-T1
+144294	169416	gene
+			locus_tag	FUN_000013
+144294	144551	mRNA
+149012	149244
+149367	149588
+149654	149897
+149952	150112
+150174	150248
+151966	152072
+152314	152429
+152496	152751
+153651	159010
+159150	164491
+167135	168360
+168722	169208
+169350	169416
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000013-T1_mrna
+			protein_id	gnl|ncbi|FUN_000013-T1
+144294	144551	CDS
+149012	149244
+149367	149588
+149654	149897
+149952	150112
+150174	150248
+151966	152072
+152314	152429
+152496	152751
+153651	159010
+159150	164491
+167135	168360
+168722	169208
+169350	169416
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000013-T1_mrna
+			protein_id	gnl|ncbi|FUN_000013-T1
+192049	194669	gene
+			locus_tag	FUN_000014
+192049	192067	mRNA
+193549	193658
+194041	194455
+194518	194669
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000014-T1_mrna
+			protein_id	gnl|ncbi|FUN_000014-T1
+192049	192067	CDS
+193549	193658
+194041	194455
+194518	194669
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000014-T1_mrna
+			protein_id	gnl|ncbi|FUN_000014-T1
+210553	209044	gene
+			locus_tag	FUN_000015
+210553	210548	mRNA
+210474	209044
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000015-T1_mrna
+			protein_id	gnl|ncbi|FUN_000015-T1
+210553	210548	CDS
+210474	209044
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000015-T1_mrna
+			protein_id	gnl|ncbi|FUN_000015-T1
+>Feature sample4
+1	7560	REFERENCE
+			CFMR	12345
+1466	1092	gene
+			locus_tag	FUN_000016
+1466	1092	mRNA
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000016-T1_mrna
+			protein_id	gnl|ncbi|FUN_000016-T1
+1466	1092	CDS
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000016-T1_mrna
+			protein_id	gnl|ncbi|FUN_000016-T1
+2126	3863	gene
+			locus_tag	FUN_000017
+2126	2199	mRNA
+2258	3224
+3284	3490
+3549	3863
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000017-T1_mrna
+			protein_id	gnl|ncbi|FUN_000017-T1
+2126	2199	CDS
+2258	3224
+3284	3490
+3549	3863
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000017-T1_mrna
+			protein_id	gnl|ncbi|FUN_000017-T1
+5494	4248	gene
+			locus_tag	FUN_000018
+5494	4930	mRNA
+4759	4248
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000018-T1_mrna
+			protein_id	gnl|ncbi|FUN_000018-T1
+5494	4930	CDS
+4759	4248
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000018-T1_mrna
+			protein_id	gnl|ncbi|FUN_000018-T1