Mercurial > repos > iuc > funannotate_annotate
diff test-data/predict_scratch/Genus_species.gff3 @ 0:a5baa4ff168d draft
"planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
| author | iuc |
|---|---|
| date | Mon, 04 Oct 2021 19:39:38 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/predict_scratch/Genus_species.gff3 Mon Oct 04 19:39:38 2021 +0000 @@ -0,0 +1,117 @@ +##gff-version 3 +sample funannotate gene 1092 1466 . - . ID=FUN_000001; +sample funannotate mRNA 1092 1466 . - . ID=FUN_000001-T1;Parent=FUN_000001;product=hypothetical protein; +sample funannotate exon 1092 1466 . - . ID=FUN_000001-T1.exon1;Parent=FUN_000001-T1; +sample funannotate CDS 1092 1466 . - 0 ID=FUN_000001-T1.cds;Parent=FUN_000001-T1; +sample funannotate gene 2565 3142 . - . ID=FUN_000002; +sample funannotate mRNA 2565 3142 . - . ID=FUN_000002-T1;Parent=FUN_000002;product=hypothetical protein; +sample funannotate exon 3138 3142 . - . ID=FUN_000002-T1.exon1;Parent=FUN_000002-T1; +sample funannotate exon 2883 3004 . - . ID=FUN_000002-T1.exon2;Parent=FUN_000002-T1; +sample funannotate exon 2565 2686 . - . ID=FUN_000002-T1.exon3;Parent=FUN_000002-T1; +sample funannotate CDS 3138 3142 . - 0 ID=FUN_000002-T1.cds;Parent=FUN_000002-T1; +sample funannotate CDS 2883 3004 . - 1 ID=FUN_000002-T1.cds;Parent=FUN_000002-T1; +sample funannotate CDS 2565 2686 . - 2 ID=FUN_000002-T1.cds;Parent=FUN_000002-T1; +sample funannotate gene 4248 5802 . - . ID=FUN_000003; +sample funannotate mRNA 4248 5802 . - . ID=FUN_000003-T1;Parent=FUN_000003;product=hypothetical protein; +sample funannotate exon 5797 5802 . - . ID=FUN_000003-T1.exon1;Parent=FUN_000003-T1; +sample funannotate exon 4937 5539 . - . ID=FUN_000003-T1.exon2;Parent=FUN_000003-T1; +sample funannotate exon 4248 4742 . - . ID=FUN_000003-T1.exon3;Parent=FUN_000003-T1; +sample funannotate CDS 5797 5802 . - 0 ID=FUN_000003-T1.cds;Parent=FUN_000003-T1; +sample funannotate CDS 4937 5539 . - 0 ID=FUN_000003-T1.cds;Parent=FUN_000003-T1; +sample funannotate CDS 4248 4742 . - 0 ID=FUN_000003-T1.cds;Parent=FUN_000003-T1; +sample funannotate gene 7691 10664 . - . ID=FUN_000004; +sample funannotate mRNA 7691 10664 . - . ID=FUN_000004-T1;Parent=FUN_000004;product=hypothetical protein; +sample funannotate exon 10657 10664 . - . ID=FUN_000004-T1.exon1;Parent=FUN_000004-T1; +sample funannotate exon 8707 10499 . - . ID=FUN_000004-T1.exon2;Parent=FUN_000004-T1; +sample funannotate exon 7691 8385 . - . ID=FUN_000004-T1.exon3;Parent=FUN_000004-T1; +sample funannotate CDS 10657 10664 . - 0 ID=FUN_000004-T1.cds;Parent=FUN_000004-T1; +sample funannotate CDS 8707 10499 . - 1 ID=FUN_000004-T1.cds;Parent=FUN_000004-T1; +sample funannotate CDS 7691 8385 . - 2 ID=FUN_000004-T1.cds;Parent=FUN_000004-T1; +sample funannotate gene 14247 15214 . - . ID=FUN_000005; +sample funannotate mRNA 14247 15214 . - . ID=FUN_000005-T1;Parent=FUN_000005;product=hypothetical protein; +sample funannotate exon 15209 15214 . - . ID=FUN_000005-T1.exon1;Parent=FUN_000005-T1; +sample funannotate exon 14247 14648 . - . ID=FUN_000005-T1.exon2;Parent=FUN_000005-T1; +sample funannotate CDS 15209 15214 . - 0 ID=FUN_000005-T1.cds;Parent=FUN_000005-T1; +sample funannotate CDS 14247 14648 . - 0 ID=FUN_000005-T1.cds;Parent=FUN_000005-T1; +sample funannotate gene 15539 16619 . + . ID=FUN_000006; +sample funannotate mRNA 15539 16619 . + . ID=FUN_000006-T1;Parent=FUN_000006;product=hypothetical protein; +sample funannotate exon 15539 15543 . + . ID=FUN_000006-T1.exon1;Parent=FUN_000006-T1; +sample funannotate exon 15646 15919 . + . ID=FUN_000006-T1.exon2;Parent=FUN_000006-T1; +sample funannotate exon 16485 16619 . + . ID=FUN_000006-T1.exon3;Parent=FUN_000006-T1; +sample funannotate CDS 15539 15543 . + 0 ID=FUN_000006-T1.cds;Parent=FUN_000006-T1; +sample funannotate CDS 15646 15919 . + 1 ID=FUN_000006-T1.cds;Parent=FUN_000006-T1; +sample funannotate CDS 16485 16619 . + 0 ID=FUN_000006-T1.cds;Parent=FUN_000006-T1; +sample funannotate gene 18358 21705 . - . ID=FUN_000007; +sample funannotate mRNA 18358 21705 . - . ID=FUN_000007-T1;Parent=FUN_000007;product=hypothetical protein; +sample funannotate exon 21700 21705 . - . ID=FUN_000007-T1.exon1;Parent=FUN_000007-T1; +sample funannotate exon 19638 21515 . - . ID=FUN_000007-T1.exon2;Parent=FUN_000007-T1; +sample funannotate exon 18358 19482 . - . ID=FUN_000007-T1.exon3;Parent=FUN_000007-T1; +sample funannotate CDS 21700 21705 . - 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1; +sample funannotate CDS 19638 21515 . - 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1; +sample funannotate CDS 18358 19482 . - 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1; +sample funannotate gene 34843 35679 . - . ID=FUN_000008; +sample funannotate mRNA 34843 35679 . - . ID=FUN_000008-T1;Parent=FUN_000008;product=hypothetical protein; +sample funannotate exon 34843 35679 . - . ID=FUN_000008-T1.exon1;Parent=FUN_000008-T1; +sample funannotate CDS 34843 35679 . - 0 ID=FUN_000008-T1.cds;Parent=FUN_000008-T1; +sample funannotate gene 40223 44130 . + . ID=FUN_000009; +sample funannotate mRNA 40223 44130 . + . ID=FUN_000009-T1;Parent=FUN_000009;product=hypothetical protein; +sample funannotate exon 40223 40396 . + . ID=FUN_000009-T1.exon1;Parent=FUN_000009-T1; +sample funannotate exon 40659 41193 . + . ID=FUN_000009-T1.exon2;Parent=FUN_000009-T1; +sample funannotate exon 41707 42080 . + . ID=FUN_000009-T1.exon3;Parent=FUN_000009-T1; +sample funannotate exon 43409 43609 . + . ID=FUN_000009-T1.exon4;Parent=FUN_000009-T1; +sample funannotate exon 43678 44130 . + . ID=FUN_000009-T1.exon5;Parent=FUN_000009-T1; +sample funannotate CDS 40223 40396 . + 0 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1; +sample funannotate CDS 40659 41193 . + 0 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1; +sample funannotate CDS 41707 42080 . + 2 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1; +sample funannotate CDS 43409 43609 . + 0 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1; +sample funannotate CDS 43678 44130 . + 0 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1; +sample funannotate gene 87202 88320 . + . ID=FUN_000010; +sample funannotate mRNA 87202 88320 . + . ID=FUN_000010-T1;Parent=FUN_000010;product=hypothetical protein; +sample funannotate exon 87202 87207 . + . ID=FUN_000010-T1.exon1;Parent=FUN_000010-T1; +sample funannotate exon 88054 88320 . + . ID=FUN_000010-T1.exon2;Parent=FUN_000010-T1; +sample funannotate CDS 87202 87207 . + 0 ID=FUN_000010-T1.cds;Parent=FUN_000010-T1; +sample funannotate CDS 88054 88320 . + 0 ID=FUN_000010-T1.cds;Parent=FUN_000010-T1; +sample funannotate gene 102510 106221 . - . ID=FUN_000011; +sample funannotate mRNA 102510 106221 . - . ID=FUN_000011-T1;Parent=FUN_000011;product=hypothetical protein; +sample funannotate exon 106216 106221 . - . ID=FUN_000011-T1.exon1;Parent=FUN_000011-T1; +sample funannotate exon 104258 104632 . - . ID=FUN_000011-T1.exon2;Parent=FUN_000011-T1; +sample funannotate exon 103696 103947 . - . ID=FUN_000011-T1.exon3;Parent=FUN_000011-T1; +sample funannotate exon 103229 103618 . - . ID=FUN_000011-T1.exon4;Parent=FUN_000011-T1; +sample funannotate exon 102510 103151 . - . ID=FUN_000011-T1.exon5;Parent=FUN_000011-T1; +sample funannotate CDS 106216 106221 . - 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1; +sample funannotate CDS 104258 104632 . - 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1; +sample funannotate CDS 103696 103947 . - 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1; +sample funannotate CDS 103229 103618 . - 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1; +sample funannotate CDS 102510 103151 . - 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1; +sample funannotate gene 167121 169212 . + . ID=FUN_000012; +sample funannotate mRNA 167121 169212 . + . ID=FUN_000012-T1;Parent=FUN_000012;product=hypothetical protein; +sample funannotate exon 167121 168069 . + . ID=FUN_000012-T1.exon1;Parent=FUN_000012-T1; +sample funannotate exon 168722 169212 . + . ID=FUN_000012-T1.exon2;Parent=FUN_000012-T1; +sample funannotate CDS 167121 168069 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate CDS 168722 169212 . + 2 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1; +sample funannotate gene 180262 180579 . + . ID=FUN_000013; +sample funannotate mRNA 180262 180579 . + . ID=FUN_000013-T1;Parent=FUN_000013;product=hypothetical protein; +sample funannotate exon 180262 180267 . + . ID=FUN_000013-T1.exon1;Parent=FUN_000013-T1; +sample funannotate exon 180400 180579 . + . ID=FUN_000013-T1.exon2;Parent=FUN_000013-T1; +sample funannotate CDS 180262 180267 . + 0 ID=FUN_000013-T1.cds;Parent=FUN_000013-T1; +sample funannotate CDS 180400 180579 . + 0 ID=FUN_000013-T1.cds;Parent=FUN_000013-T1; +sample funannotate gene 208619 210553 . - . ID=FUN_000014; +sample funannotate mRNA 208619 210553 . - . ID=FUN_000014-T1;Parent=FUN_000014;product=hypothetical protein; +sample funannotate exon 210548 210553 . - . ID=FUN_000014-T1.exon1;Parent=FUN_000014-T1; +sample funannotate exon 209053 210474 . - . ID=FUN_000014-T1.exon2;Parent=FUN_000014-T1; +sample funannotate exon 208619 208645 . - . ID=FUN_000014-T1.exon3;Parent=FUN_000014-T1; +sample funannotate CDS 210548 210553 . - 0 ID=FUN_000014-T1.cds;Parent=FUN_000014-T1; +sample funannotate CDS 209053 210474 . - 0 ID=FUN_000014-T1.cds;Parent=FUN_000014-T1; +sample funannotate CDS 208619 208645 . - 0 ID=FUN_000014-T1.cds;Parent=FUN_000014-T1; +sample4 funannotate gene 1092 1466 . - . ID=FUN_000015; +sample4 funannotate mRNA 1092 1466 . - . ID=FUN_000015-T1;Parent=FUN_000015;product=hypothetical protein; +sample4 funannotate exon 1092 1466 . - . ID=FUN_000015-T1.exon1;Parent=FUN_000015-T1; +sample4 funannotate CDS 1092 1466 . - 0 ID=FUN_000015-T1.cds;Parent=FUN_000015-T1; +sample4 funannotate gene 2126 3537 . + . ID=FUN_000016; +sample4 funannotate mRNA 2126 3537 . + . ID=FUN_000016-T1;Parent=FUN_000016;product=hypothetical protein; +sample4 funannotate exon 2126 2199 . + . ID=FUN_000016-T1.exon1;Parent=FUN_000016-T1; +sample4 funannotate exon 2258 3224 . + . ID=FUN_000016-T1.exon2;Parent=FUN_000016-T1; +sample4 funannotate exon 3284 3537 . + . ID=FUN_000016-T1.exon3;Parent=FUN_000016-T1; +sample4 funannotate CDS 2126 2199 . + 0 ID=FUN_000016-T1.cds;Parent=FUN_000016-T1; +sample4 funannotate CDS 2258 3224 . + 1 ID=FUN_000016-T1.cds;Parent=FUN_000016-T1; +sample4 funannotate CDS 3284 3537 . + 0 ID=FUN_000016-T1.cds;Parent=FUN_000016-T1;