Mercurial > repos > iuc > funannotate_annotate
diff test-data/predict_scratch/Genus_species.stats.json @ 0:a5baa4ff168d draft
"planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
author | iuc |
---|---|
date | Mon, 04 Oct 2021 19:39:38 +0000 |
parents | |
children | 9feee7fc49a1 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/predict_scratch/Genus_species.stats.json Mon Oct 04 19:39:38 2021 +0000 @@ -0,0 +1,119 @@ +{ + "format": "annotation", + "command": "/home/abretaud/miniconda3/envs/__funannotate@1.8.7/bin/funannotate predict --input /tmp/tmpm833xrq1/files/e/1/c/dataset_e1c34c74-e579-4cab-b0ed-5ce938ce4e4b.dat --out output --database /home/abretaud/.planemo/planemo_tmp_yntx6ieu/test-data/funannotate_db --species Genus species --isolate --strain --organism other --ploidy 1 --SeqCenter CFMR --SeqAccession 12345 --name FUN_ --numbering 1 --p2g_pident 80 --p2g_prefilter diamond --min_training_models 3 --busco_seed_species fly --busco_db insecta --evm-partition-interval 1500 --min_intronlen 10 --max_intronlen 3000 --min_protlen 50 --repeat_filter overlap blast --cpus 1", + "organism": "Genus_species", + "software": { + "name": "funannotate", + "version": "1.8.7", + "date": "2021-07-21", + "resources": { + "merops": { + "type": "diamond", + "version": "12.0", + "date": "2017-10-04", + "num-records": "5009" + }, + "uniprot": { + "type": "diamond", + "version": "2021_03", + "date": "2021-06-02", + "num-records": "565254" + }, + "dbCAN": { + "type": "hmmer3", + "version": "9.0", + "date": "2020-08-04", + "num-records": "641" + }, + "pfam": { + "type": "hmmer3", + "version": "34.0", + "date": "2021-03", + "num-records": "19179" + }, + "repeats": { + "type": "diamond", + "version": "1.0", + "date": "2021-07-19", + "num-records": "11950" + }, + "go": { + "type": "text", + "version": "2021-07-02", + "date": "2021-07-02", + "num-records": "47228" + }, + "mibig": { + "type": "diamond", + "version": "1.4", + "date": "2021-07-19", + "num-records": "31023" + }, + "interpro": { + "type": "xml", + "version": "86.0", + "date": "2021-06-03", + "num-records": "38913" + }, + "busco_outgroups": { + "type": "outgroups", + "version": "1.0", + "date": "2021-07-19", + "num-records": "8" + }, + "gene2product": { + "type": "text", + "version": "1.70", + "date": "2021-06-15", + "num-records": "34039" + } + } + }, + "assembly": { + "num_contigs": 4, + "length": 227430, + "mean_length": 56857.5, + "N50": 215740, + "L50": 1, + "N90": 215740, + "L90": 1, + "GC_content": 42.86 + }, + "annotation": { + "genes": 16, + "common_name": 0, + "mRNA": 16, + "tRNA": 0, + "ncRNA": 0, + "rRNA": 0, + "avg_gene_length": 1660.69, + "transcript-level": { + "CDS_transcripts": 16, + "CDS_five_utr": 0, + "CDS_three_utr": 0, + "CDS_no_utr": 16, + "CDS_five_three_utr": 0, + "CDS_complete": 15, + "CDS_no-start": 0, + "CDS_no-stop": 1, + "CDS_no-start_no-stop": 0, + "total_exons": 42, + "total_cds_exons": 42, + "multiple_exon_transcript": 13, + "single_exon_transcript": 3, + "avg_exon_length": 402.36, + "avg_protein_length": 359.81, + "functional": { + "go_terms": 0, + "interproscan": 0, + "eggnog": 0, + "pfam": 0, + "cazyme": 0, + "merops": 0, + "busco": 0, + "secretion": 0 + }, + "pct_exon_overlap_protein_evidence": 11.9 + } + } +} \ No newline at end of file