Mercurial > repos > iuc > funannotate_annotate

diff test-data/predict_scratch/Genus_species.tbl @ 0:a5baa4ff168d draft

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"planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
author iuc
date Mon, 04 Oct 2021 19:39:38 +0000
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/predict_scratch/Genus_species.tbl	Mon Oct 04 19:39:38 2021 +0000
@@ -0,0 +1,234 @@
+>Feature sample
+1	215740	REFERENCE
+			CFMR	12345
+1466	1092	gene
+			locus_tag	FUN_000001
+1466	1092	mRNA
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000001-T1_mrna
+			protein_id	gnl|ncbi|FUN_000001-T1
+1466	1092	CDS
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000001-T1_mrna
+			protein_id	gnl|ncbi|FUN_000001-T1
+3142	2565	gene
+			locus_tag	FUN_000002
+3142	3138	mRNA
+3004	2883
+2686	2565
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000002-T1_mrna
+			protein_id	gnl|ncbi|FUN_000002-T1
+3142	3138	CDS
+3004	2883
+2686	2565
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000002-T1_mrna
+			protein_id	gnl|ncbi|FUN_000002-T1
+5802	4248	gene
+			locus_tag	FUN_000003
+5802	5797	mRNA
+5539	4937
+4742	4248
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000003-T1_mrna
+			protein_id	gnl|ncbi|FUN_000003-T1
+5802	5797	CDS
+5539	4937
+4742	4248
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000003-T1_mrna
+			protein_id	gnl|ncbi|FUN_000003-T1
+10664	7691	gene
+			locus_tag	FUN_000004
+10664	10657	mRNA
+10499	8707
+8385	7691
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000004-T1_mrna
+			protein_id	gnl|ncbi|FUN_000004-T1
+10664	10657	CDS
+10499	8707
+8385	7691
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000004-T1_mrna
+			protein_id	gnl|ncbi|FUN_000004-T1
+15214	14247	gene
+			locus_tag	FUN_000005
+15214	15209	mRNA
+14648	14247
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000005-T1_mrna
+			protein_id	gnl|ncbi|FUN_000005-T1
+15214	15209	CDS
+14648	14247
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000005-T1_mrna
+			protein_id	gnl|ncbi|FUN_000005-T1
+15539	16619	gene
+			locus_tag	FUN_000006
+15539	15543	mRNA
+15646	15919
+16485	16619
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000006-T1_mrna
+			protein_id	gnl|ncbi|FUN_000006-T1
+15539	15543	CDS
+15646	15919
+16485	16619
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000006-T1_mrna
+			protein_id	gnl|ncbi|FUN_000006-T1
+21705	18358	gene
+			locus_tag	FUN_000007
+21705	21700	mRNA
+21515	19638
+19482	18358
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000007-T1_mrna
+			protein_id	gnl|ncbi|FUN_000007-T1
+21705	21700	CDS
+21515	19638
+19482	18358
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000007-T1_mrna
+			protein_id	gnl|ncbi|FUN_000007-T1
+35679	34843	gene
+			locus_tag	FUN_000008
+35679	34843	mRNA
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000008-T1_mrna
+			protein_id	gnl|ncbi|FUN_000008-T1
+35679	34843	CDS
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000008-T1_mrna
+			protein_id	gnl|ncbi|FUN_000008-T1
+40223	44130	gene
+			locus_tag	FUN_000009
+40223	40396	mRNA
+40659	41193
+41707	42080
+43409	43609
+43678	44130
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000009-T1_mrna
+			protein_id	gnl|ncbi|FUN_000009-T1
+40223	40396	CDS
+40659	41193
+41707	42080
+43409	43609
+43678	44130
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000009-T1_mrna
+			protein_id	gnl|ncbi|FUN_000009-T1
+87202	88320	gene
+			locus_tag	FUN_000010
+87202	87207	mRNA
+88054	88320
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000010-T1_mrna
+			protein_id	gnl|ncbi|FUN_000010-T1
+87202	87207	CDS
+88054	88320
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000010-T1_mrna
+			protein_id	gnl|ncbi|FUN_000010-T1
+106221	102510	gene
+			locus_tag	FUN_000011
+106221	106216	mRNA
+104632	104258
+103947	103696
+103618	103229
+103151	102510
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000011-T1_mrna
+			protein_id	gnl|ncbi|FUN_000011-T1
+106221	106216	CDS
+104632	104258
+103947	103696
+103618	103229
+103151	102510
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000011-T1_mrna
+			protein_id	gnl|ncbi|FUN_000011-T1
+167121	169212	gene
+			locus_tag	FUN_000012
+167121	168069	mRNA
+168722	169212
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000012-T1_mrna
+			protein_id	gnl|ncbi|FUN_000012-T1
+167121	168069	CDS
+168722	169212
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000012-T1_mrna
+			protein_id	gnl|ncbi|FUN_000012-T1
+180262	180579	gene
+			locus_tag	FUN_000013
+180262	180267	mRNA
+180400	180579
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000013-T1_mrna
+			protein_id	gnl|ncbi|FUN_000013-T1
+180262	180267	CDS
+180400	180579
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000013-T1_mrna
+			protein_id	gnl|ncbi|FUN_000013-T1
+210553	208619	gene
+			locus_tag	FUN_000014
+210553	210548	mRNA
+210474	209053
+208645	208619
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000014-T1_mrna
+			protein_id	gnl|ncbi|FUN_000014-T1
+210553	210548	CDS
+210474	209053
+208645	208619
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000014-T1_mrna
+			protein_id	gnl|ncbi|FUN_000014-T1
+>Feature sample4
+1	7560	REFERENCE
+			CFMR	12345
+1466	1092	gene
+			locus_tag	FUN_000015
+1466	1092	mRNA
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000015-T1_mrna
+			protein_id	gnl|ncbi|FUN_000015-T1
+1466	1092	CDS
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000015-T1_mrna
+			protein_id	gnl|ncbi|FUN_000015-T1
+2126	>3537	gene
+			locus_tag	FUN_000016
+2126	2199	mRNA
+2258	3224
+3284	>3537
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000016-T1_mrna
+			protein_id	gnl|ncbi|FUN_000016-T1
+2126	2199	CDS
+2258	3224
+3284	>3537
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000016-T1_mrna
+			protein_id	gnl|ncbi|FUN_000016-T1