view test-data/predict_augustus/Genus_species.stats.json @ 9:3bbe70fef6df draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit cb8c31569524d18872950ac43d389bf6c6931a3c
author iuc
date Mon, 11 Dec 2023 19:18:59 +0000
parents a5baa4ff168d
children
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{
    "format": "annotation",
    "command": "/home/abretaud/miniconda3/envs/__funannotate@1.8.7/bin/funannotate predict --input /tmp/tmpkgev4773/files/c/e/8/dataset_ce85d0fa-1534-47df-8c1e-5f0a5c1b82f0.dat --out output --database /home/abretaud/.planemo/planemo_tmp__fmxm4ll/test-data/funannotate_db --species Genus species --isolate  --strain  --organism other --ploidy 1 --SeqCenter CFMR --SeqAccession 12345 --name FUN_ --numbering 1 --p2g_pident 80 --p2g_prefilter diamond --augustus_species fly --min_training_models 200 --busco_seed_species fly --busco_db insecta --evm-partition-interval 1500 --min_intronlen 10 --max_intronlen 3000 --min_protlen 50 --repeat_filter overlap blast --cpus 1",
    "organism": "Genus_species",
    "software": {
        "name": "funannotate",
        "version": "1.8.7",
        "date": "2021-07-21",
        "resources": {
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                "date": "2017-10-04",
                "num-records": "5009"
            },
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                "date": "2021-06-02",
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            "dbCAN": {
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                "version": "9.0",
                "date": "2020-08-04",
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                "date": "2021-03",
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            "repeats": {
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                "date": "2021-07-19",
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            "go": {
                "type": "text",
                "version": "2021-07-02",
                "date": "2021-07-02",
                "num-records": "47228"
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                "date": "2021-07-19",
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            "interpro": {
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            "busco_outgroups": {
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                "version": "1.0",
                "date": "2021-07-19",
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            },
            "gene2product": {
                "type": "text",
                "version": "1.70",
                "date": "2021-06-15",
                "num-records": "34039"
            }
        }
    },
    "assembly": {
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        "length": 227430,
        "mean_length": 56857.5,
        "N50": 215740,
        "L50": 1,
        "N90": 215740,
        "L90": 1,
        "GC_content": 42.86
    },
    "annotation": {
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        "common_name": 0,
        "mRNA": 18,
        "tRNA": 0,
        "ncRNA": 0,
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        "avg_gene_length": 2695.06,
        "transcript-level": {
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            "CDS_five_utr": 0,
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            "CDS_complete": 18,
            "CDS_no-start": 0,
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            "CDS_no-start_no-stop": 0,
            "total_exons": 57,
            "total_cds_exons": 57,
            "multiple_exon_transcript": 16,
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            "avg_exon_length": 558.58,
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            "functional": {
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        }
    }
}