Mercurial > repos > iuc > funannotate_annotate

view test-data/predict_bam/Genus_species.tbl @ 5:9feee7fc49a1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 2589d2785ca90160a22a5fe14e03311e189ea51d
author iuc
date Thu, 13 Apr 2023 17:13:04 +0000
parents a5baa4ff168d
children
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>Feature sample
1	215740	REFERENCE
			CFMR	12345
<2331	3254	gene
			locus_tag	FUN_000001
<2331	3254	mRNA
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000001-T1_mrna
			protein_id	gnl|ncbi|FUN_000001-T1
<2331	3254	CDS
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000001-T1_mrna
			protein_id	gnl|ncbi|FUN_000001-T1
5802	4883	gene
			locus_tag	FUN_000002
5802	5797	mRNA
5539	4883
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000002-T1_mrna
			protein_id	gnl|ncbi|FUN_000002-T1
5802	5797	CDS
5539	4883
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000002-T1_mrna
			protein_id	gnl|ncbi|FUN_000002-T1
10557	8696	gene
			locus_tag	FUN_000003
10557	10549	mRNA
10462	8696
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000003-T1_mrna
			protein_id	gnl|ncbi|FUN_000003-T1
10557	10549	CDS
10462	8696
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000003-T1_mrna
			protein_id	gnl|ncbi|FUN_000003-T1
15214	14247	gene
			locus_tag	FUN_000004
15214	15209	mRNA
14648	14247
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000004-T1_mrna
			protein_id	gnl|ncbi|FUN_000004-T1
15214	15209	CDS
14648	14247
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000004-T1_mrna
			protein_id	gnl|ncbi|FUN_000004-T1
21705	19533	gene
			locus_tag	FUN_000005
21705	21700	mRNA
21515	19533
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000005-T1_mrna
			protein_id	gnl|ncbi|FUN_000005-T1
21705	21700	CDS
21515	19533
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000005-T1_mrna
			protein_id	gnl|ncbi|FUN_000005-T1
35679	34843	gene
			locus_tag	FUN_000006
35679	34843	mRNA
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000006-T1_mrna
			protein_id	gnl|ncbi|FUN_000006-T1
35679	34843	CDS
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000006-T1_mrna
			protein_id	gnl|ncbi|FUN_000006-T1
40223	44130	gene
			locus_tag	FUN_000007
40223	40396	mRNA
40659	41193
41707	42080
43409	43609
43678	44130
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000007-T1_mrna
			protein_id	gnl|ncbi|FUN_000007-T1
40223	40396	CDS
40659	41193
41707	42080
43409	43609
43678	44130
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000007-T1_mrna
			protein_id	gnl|ncbi|FUN_000007-T1
47195	45527	gene
			locus_tag	FUN_000008
47195	46753	mRNA
46330	46214
46157	45527
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000008-T1_mrna
			protein_id	gnl|ncbi|FUN_000008-T1
47195	46753	CDS
46330	46214
46157	45527
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000008-T1_mrna
			protein_id	gnl|ncbi|FUN_000008-T1
79527	78685	gene
			locus_tag	FUN_000009
79527	79519	mRNA
79068	78685
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000009-T1_mrna
			protein_id	gnl|ncbi|FUN_000009-T1
79527	79519	CDS
79068	78685
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000009-T1_mrna
			protein_id	gnl|ncbi|FUN_000009-T1
87202	88320	gene
			locus_tag	FUN_000010
87202	87207	mRNA
88054	88320
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000010-T1_mrna
			protein_id	gnl|ncbi|FUN_000010-T1
87202	87207	CDS
88054	88320
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000010-T1_mrna
			protein_id	gnl|ncbi|FUN_000010-T1
133587	137862	gene
			locus_tag	FUN_000011
133587	134504	mRNA
134720	135510
135569	136284
137516	137862
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000011-T1_mrna
			protein_id	gnl|ncbi|FUN_000011-T1
133587	134504	CDS
134720	135510
135569	136284
137516	137862
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000011-T1_mrna
			protein_id	gnl|ncbi|FUN_000011-T1
144294	164495	gene
			locus_tag	FUN_000012
144294	144551	mRNA
149012	149244
149367	149588
149654	149897
149952	150112
150174	150248
151966	152072
152314	152429
152496	152751
153296	153630
153689	155122
155789	158975
159190	164495
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000012-T1_mrna
			protein_id	gnl|ncbi|FUN_000012-T1
144294	144551	CDS
149012	149244
149367	149588
149654	149897
149952	150112
150174	150248
151966	152072
152314	152429
152496	152751
153296	153630
153689	155122
155789	158975
159190	164495
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000012-T1_mrna
			protein_id	gnl|ncbi|FUN_000012-T1
167121	169212	gene
			locus_tag	FUN_000013
167121	168360	mRNA
168722	169212
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000013-T1_mrna
			protein_id	gnl|ncbi|FUN_000013-T1
167121	168360	CDS
168722	169212
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000013-T1_mrna
			protein_id	gnl|ncbi|FUN_000013-T1
178916	176699	gene
			locus_tag	FUN_000014
178916	178873	mRNA
177172	176887
176824	176699
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000014-T1_mrna
			protein_id	gnl|ncbi|FUN_000014-T1
178916	178873	CDS
177172	176887
176824	176699
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000014-T1_mrna
			protein_id	gnl|ncbi|FUN_000014-T1
192004	194669	gene
			locus_tag	FUN_000015
192004	192067	mRNA
193549	193658
194041	194455
194518	194669
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000015-T1_mrna
			protein_id	gnl|ncbi|FUN_000015-T1
192004	192067	CDS
193549	193658
194041	194455
194518	194669
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000015-T1_mrna
			protein_id	gnl|ncbi|FUN_000015-T1
210553	209044	gene
			locus_tag	FUN_000016
210553	210548	mRNA
210474	209044
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000016-T1_mrna
			protein_id	gnl|ncbi|FUN_000016-T1
210553	210548	CDS
210474	209044
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000016-T1_mrna
			protein_id	gnl|ncbi|FUN_000016-T1
>Feature sample4
1	7560	REFERENCE
			CFMR	12345
1466	1092	gene
			locus_tag	FUN_000017
1466	1092	mRNA
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000017-T1_mrna
			protein_id	gnl|ncbi|FUN_000017-T1
1466	1092	CDS
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000017-T1_mrna
			protein_id	gnl|ncbi|FUN_000017-T1
2126	>3537	gene
			locus_tag	FUN_000018
2126	2199	mRNA
2258	3224
3284	>3537
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000018-T1_mrna
			protein_id	gnl|ncbi|FUN_000018-T1
2126	2199	CDS
2258	3224
3284	>3537
			codon_start	1
			product	hypothetical protein
			transcript_id	gnl|ncbi|FUN_000018-T1_mrna
			protein_id	gnl|ncbi|FUN_000018-T1