Mercurial > repos > iuc > funannotate_annotate
view test-data/predict_scratch/Genus_species.discrepency.report.txt @ 5:9feee7fc49a1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 2589d2785ca90160a22a5fe14e03311e189ea51d
| author | iuc |
|---|---|
| date | Thu, 13 Apr 2023 17:13:04 +0000 |
| parents | a5baa4ff168d |
| children |
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Discrepancy Report Results Summary DISC_PROTEIN_NAMES:All proteins have same name "hypothetical protein" DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same) DISC_FEATURE_COUNT:gene: 70 present DISC_FEATURE_COUNT:CDS: 69 present DISC_FEATURE_COUNT:mRNA: 69 present DISC_FEATURE_COUNT:tRNA: 1 present DISC_COUNT_NUCLEOTIDES:4 nucleotide Bioseqs are present JOINED_FEATURES:116 features have joined locations. NO_ANNOTATION:2 bioseqs have no features DISC_QUALITY_SCORES:Quality scores are missing on all sequences. FATAL: DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS:1 features have partial ends that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so ONCALLER_COMMENT_PRESENT:4 comment descriptors were found (all same) MISSING_GENOMEASSEMBLY_COMMENTS:4 bioseqs are missing GenomeAssembly structured comments MOLTYPE_NOT_MRNA:4 molecule types are not set as mRNA. TECHNIQUE_NOT_TSA:4 technique are not set as TSA MISSING_STRUCTURED_COMMENT:4 sequences do not include structured comments. MISSING_PROJECT:73 sequences do not include project. DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same) Detailed Report DiscRep_ALL:DISC_PROTEIN_NAMES::All proteins have same name "hypothetical protein" DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same) DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::4 sources have 'Genus species' for taxname DiscRep_ALL:DISC_FEATURE_COUNT::gene: 70 present DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 69 present DiscRep_ALL:DISC_FEATURE_COUNT::mRNA: 69 present DiscRep_ALL:DISC_FEATURE_COUNT::tRNA: 1 present DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::4 nucleotide Bioseqs are present genome:sample (length 720580) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560) DiscRep_ALL:JOINED_FEATURES::116 features have joined locations. DiscRep_SUB:JOINED_FEATURES::116 features have joined location but no exception genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284-3490, 3727-3855) FUN_000069 genome:mRNA hypothetical protein (sample4:2126-2199, 2258-3224, 3284-3490, 3727-3855) FUN_000069 genome:mRNA hypothetical protein (sample:2126-2199, 2258-3224, 3284-3490, 3727-3855) FUN_000001 genome:CDS hypothetical protein (sample:2126-2199, 2258-3224, 3284-3490, 3727-3855) FUN_000001 genome:CDS hypothetical protein (sample:c5671-5666, c5539-4930, c4759-4248) FUN_000002 genome:mRNA hypothetical protein (sample:c5671-5666, c5539-4930, c4759-4248) FUN_000002 genome:CDS hypothetical protein (sample4:c5671-5666, c5539-4930, c4759-4248) FUN_000070 genome:mRNA hypothetical protein (sample4:c5671-5666, c5539-4930, c4759-4248) FUN_000070 genome:CDS hypothetical protein (sample:c11104-10853, c10794-10663, c10501-8707, c8385-7691) FUN_000003 genome:mRNA hypothetical protein (sample:c11104-10853, c10794-10663, c10501-8707, c8385-7691) FUN_000003 genome:CDS hypothetical protein (sample:c21523-21517, c21454-19638, c19482-18513, c18490-18378, c18274-18215, c18099-17296, c17188-15353, c15289-15101, c14995-14794, c14659-14247) FUN_000004 genome:mRNA hypothetical protein (sample:c21523-21517, c21454-19638, c19482-18513, c18490-18378, c18274-18215, c18099-17296, c17188-15353, c15289-15101, c14995-14794, c14659-14247) FUN_000004 genome:mRNA hypothetical protein (sample:c27475-27470, c27042-26112, c25838-25828) FUN_000005 genome:CDS hypothetical protein (sample:c27475-27470, c27042-26112, c25838-25828) FUN_000005 genome:CDS hypothetical protein (sample:40223-40226, 40239-40396, 40659-41193, 41707-42107) FUN_000007 genome:mRNA hypothetical protein (sample:40223-40226, 40239-40396, 40659-41193, 41707-42107) FUN_000007 genome:CDS hypothetical protein (sample:43455-43462, 43623-44130) FUN_000008 genome:mRNA hypothetical protein (sample:43455-43462, 43623-44130) FUN_000008 genome:CDS hypothetical protein (sample:c57154-57146, c56873-56484) FUN_000009 genome:mRNA hypothetical protein (sample:c57154-57146, c56873-56484) FUN_000009 genome:mRNA hypothetical protein (sample:79168-79175, 79510-80518) FUN_000010 genome:CDS hypothetical protein (sample:79168-79175, 79510-80518) FUN_000010 genome:mRNA hypothetical protein (sample:94445-94448, 94563-94732, 94873-95583) FUN_000011 genome:CDS hypothetical protein (sample:94445-94448, 94563-94732, 94873-95583) FUN_000011 genome:mRNA hypothetical protein (sample:133134-133142, 133209-134216, 134234-134242) FUN_000012 genome:CDS hypothetical protein (sample:133134-133142, 133209-134216, 134234-134242) FUN_000012 genome:mRNA hypothetical protein (sample:134353-134357, 134396-134539, 134668-135510, 135569-136346) FUN_000013 genome:CDS hypothetical protein (sample:134353-134357, 134396-134539, 134668-135510, 135569-136346) FUN_000013 genome:mRNA hypothetical protein (sample:c154297-154294, c153638-153202) FUN_000014 genome:CDS hypothetical protein (sample:c154297-154294, c153638-153202) FUN_000014 genome:mRNA hypothetical protein (sample:167121-168360, 168722-169212) FUN_000015 genome:CDS hypothetical protein (sample:167121-168360, 168722-169212) FUN_000015 genome:CDS hypothetical protein (sample:c178787-178780, c177172-176887, c176824-176699) FUN_000016 genome:mRNA hypothetical protein (sample:c178787-178780, c177172-176887, c176824-176699) FUN_000016 genome:mRNA hypothetical protein (sample:c180759-180756, c180698-180028) FUN_000017 genome:CDS hypothetical protein (sample:c180759-180756, c180698-180028) FUN_000017 genome:CDS hypothetical protein (sample:c184433-184429, c184054-183921, c183856-183710, c183658-183489) FUN_000018 genome:mRNA hypothetical protein (sample:c184433-184429, c184054-183921, c183856-183710, c183658-183489) FUN_000018 genome:CDS hypothetical protein (sample:c186328-186324, c186254-186053) FUN_000019 genome:mRNA hypothetical protein (sample:c186328-186324, c186254-186053) FUN_000019 genome:CDS hypothetical protein (sample:194065-194461, 194518-194669) FUN_000020 genome:mRNA hypothetical protein (sample:194065-194461, 194518-194669) FUN_000020 genome:CDS hypothetical protein (sample:c215109-214958, c214878-214671, c213306-213085) FUN_000021 genome:mRNA hypothetical protein (sample:c215109-214958, c214878-214671, c213306-213085) FUN_000021 genome:CDS hypothetical protein (sample:386187-386191, 386272-387075, 387120-387144) FUN_000025 genome:mRNA hypothetical protein (sample:386187-386191, 386272-387075, 387120-387144) FUN_000025 genome:CDS hypothetical protein (sample:391297-391301, 391479-391489, 391758-392254, 392500-392851, 393283-393638) FUN_000026 genome:mRNA hypothetical protein (sample:391297-391301, 391479-391489, 391758-392254, 392500-392851, 393283-393638) FUN_000026 genome:CDS hypothetical protein (sample:c402790-402786, c402710-400817, c400781-400773) FUN_000027 genome:mRNA hypothetical protein (sample:c402790-402786, c402710-400817, c400781-400773) FUN_000027 genome:CDS hypothetical protein (sample:c411102-410699, c410403-410197, c409305-408840, c408474-407989, c407903-407694, c407225-406272, c406091-405530, c405518-405391) FUN_000028 genome:mRNA hypothetical protein (sample:c411102-410699, c410403-410197, c409305-408840, c408474-407989, c407903-407694, c407225-406272, c406091-405530, c405518-405391) FUN_000028 genome:CDS hypothetical protein (sample:c429748-429644, c429578-429470, c429273-429076, c428990-428479) FUN_000029 genome:mRNA hypothetical protein (sample:c429748-429644, c429578-429470, c429273-429076, c428990-428479) FUN_000029 genome:CDS hypothetical protein (sample:c445172-445169, c445114-444429) FUN_000030 genome:mRNA hypothetical protein (sample:c445172-445169, c445114-444429) FUN_000030 genome:CDS hypothetical protein (sample:446127-446275, 446336-446553, 446619-446752, 446956-447105, 447169-447711) FUN_000031 genome:mRNA hypothetical protein (sample:446127-446275, 446336-446553, 446619-446752, 446956-447105, 447169-447711) FUN_000031 genome:CDS hypothetical protein (sample:c454670-454666, c454610-454412) FUN_000034 genome:mRNA hypothetical protein (sample:c454670-454666, c454610-454412) FUN_000034 genome:CDS hypothetical protein (sample:c457592-457587, c457550-457413, c457045-456442, c456248-456040, c455256-454693) FUN_000035 genome:mRNA hypothetical protein (sample:c457592-457587, c457550-457413, c457045-456442, c456248-456040, c455256-454693) FUN_000035 genome:CDS hypothetical protein (sample:459816-460113, 460220-461690, 461752-462148, 462263-462454) FUN_000037 genome:mRNA hypothetical protein (sample:459816-460113, 460220-461690, 461752-462148, 462263-462454) FUN_000037 genome:CDS hypothetical protein (sample:c463679-463652, c463593-463293, c463086-462819) FUN_000038 genome:mRNA hypothetical protein (sample:c463679-463652, c463593-463293, c463086-462819) FUN_000038 genome:mRNA hypothetical protein (sample:c466984-466799, c466039-465912, c465617-464874, c464814-464633, c464576-464311) FUN_000039 genome:CDS hypothetical protein (sample:c466984-466799, c466039-465912, c465617-464874, c464814-464633, c464576-464311) FUN_000039 genome:CDS hypothetical protein (sample:c470961-470953, c470641-470150, c470077-469730) FUN_000040 genome:mRNA hypothetical protein (sample:c470961-470953, c470641-470150, c470077-469730) FUN_000040 genome:CDS hypothetical protein (sample:479876-480089, 480295-481339, 481394-481823) FUN_000041 genome:mRNA hypothetical protein (sample:479876-480089, 480295-481339, 481394-481823) FUN_000041 genome:CDS hypothetical protein (sample:c485565-485561, c485533-484891) FUN_000043 genome:mRNA hypothetical protein (sample:c485565-485561, c485533-484891) FUN_000043 genome:CDS hypothetical protein (sample:493013-493020, 493173-493452, 493541-493621, 493683-493826) FUN_000044 genome:mRNA hypothetical protein (sample:493013-493020, 493173-493452, 493541-493621, 493683-493826) FUN_000044 genome:CDS hypothetical protein (sample:c504016-504013, c503973-502325) FUN_000045 genome:mRNA hypothetical protein (sample:c504016-504013, c503973-502325) FUN_000045 genome:CDS hypothetical protein (sample:c521592-521588, c521275-520726, c520654-520482, c520181-520050, c519790-519639, c519580-519414) FUN_000046 genome:mRNA hypothetical protein (sample:c521592-521588, c521275-520726, c520654-520482, c520181-520050, c519790-519639, c519580-519414) FUN_000046 genome:CDS hypothetical protein (sample:c523738-523733, c523044-522567, c522383-522277, c522160-522056) FUN_000047 genome:mRNA hypothetical protein (sample:c523738-523733, c523044-522567, c522383-522277, c522160-522056) FUN_000047 genome:CDS hypothetical protein (sample:c525153-524964, c524909-524560) FUN_000048 genome:mRNA hypothetical protein (sample:c525153-524964, c524909-524560) FUN_000048 genome:CDS hypothetical protein (sample:c540618-540358, c539917-539336) FUN_000049 genome:mRNA hypothetical protein (sample:c540618-540358, c539917-539336) FUN_000049 genome:CDS hypothetical protein (sample:568959-568962, 569109-569293, 569311->569481) FUN_000051 genome:mRNA hypothetical protein (sample:568959-568962, 569109-569293, 569311->569481) FUN_000051 genome:CDS hypothetical protein (sample:582311-582319, 582423-582656, 582845-583000) FUN_000053 genome:mRNA hypothetical protein (sample:582311-582319, 582423-582656, 582845-583000) FUN_000053 genome:CDS hypothetical protein (sample:c584495-584344, c584276-583775, c583703-583551) FUN_000054 genome:mRNA hypothetical protein (sample:c584495-584344, c584276-583775, c583703-583551) FUN_000054 genome:CDS hypothetical protein (sample:c588129-586399, c585970-585768, c585707-585578) FUN_000055 genome:mRNA hypothetical protein (sample:c588129-586399, c585970-585768, c585707-585578) FUN_000055 genome:CDS hypothetical protein (sample:595803-595807, 596052-596670) FUN_000056 genome:mRNA hypothetical protein (sample:595803-595807, 596052-596670) FUN_000056 genome:CDS hypothetical protein (sample:598307-598335, 598398-598764) FUN_000057 genome:mRNA hypothetical protein (sample:598307-598335, 598398-598764) FUN_000057 genome:CDS hypothetical protein (sample:c600874-600870, c600730-600653, c600595-599095) FUN_000058 genome:mRNA hypothetical protein (sample:c600874-600870, c600730-600653, c600595-599095) FUN_000058 genome:CDS hypothetical protein (sample:603352-603370, 603434-604230) FUN_000059 genome:mRNA hypothetical protein (sample:603352-603370, 603434-604230) FUN_000059 genome:CDS hypothetical protein (sample:c611871-611867, c611601-611358, c611278-610049, c609998-609728, c609672-607742, c607241-607065, c606108-605908, c605852-605487, c605417-605316, c605240-605058) FUN_000060 genome:mRNA hypothetical protein (sample:c611871-611867, c611601-611358, c611278-610049, c609998-609728, c609672-607742, c607241-607065, c606108-605908, c605852-605487, c605417-605316, c605240-605058) FUN_000060 genome:CDS hypothetical protein (sample:c689310-689306, c689229-688494, c688430-687270, c687185-685812) FUN_000063 genome:mRNA hypothetical protein (sample:c689310-689306, c689229-688494, c688430-687270, c687185-685812) FUN_000063 genome:CDS hypothetical protein (sample:c692794-692573, c692447-692220, c692151-692128) FUN_000064 genome:mRNA hypothetical protein (sample:c692794-692573, c692447-692220, c692151-692128) FUN_000064 genome:CDS hypothetical protein (sample:694460-694467, 694516-694569, 694623-695049, 695109-695450, 695506-695859) FUN_000065 genome:mRNA hypothetical protein (sample:694460-694467, 694516-694569, 694623-695049, 695109-695450, 695506-695859) FUN_000065 genome:CDS hypothetical protein (sample:c696909-696904, c696856-695981) FUN_000066 genome:mRNA hypothetical protein (sample:c696909-696904, c696856-695981) FUN_000066 genome:CDS hypothetical protein (sample:697479-697750, 698245-699085) FUN_000067 genome:mRNA hypothetical protein (sample:697479-697750, 698245-699085) FUN_000067 genome:CDS hypothetical protein (sample:c700743-700586, c700523-700435, c700365-699296) FUN_000068 genome:mRNA hypothetical protein (sample:c700743-700586, c700523-700435, c700365-699296) FUN_000068 DiscRep_ALL:NO_ANNOTATION::2 bioseqs have no features genome:sample2 (length 2030) genome:sample3 (length 2100) DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences. FATAL: DiscRep_ALL:DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS::1 features have partial ends that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so genome:CDS hypothetical protein (sample:568959-568962, 569109-569293, 569311->569481) FUN_000051 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::4 comment descriptors were found (all same) genome:sample:"Annotated using Funannotate 1.8.15" genome:sample2:"Annotated using Funannotate 1.8.15" genome:sample3:"Annotated using Funannotate 1.8.15" genome:sample4:"Annotated using Funannotate 1.8.15" DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::4 bioseqs are missing GenomeAssembly structured comments genome:sample (length 720580) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560) DiscRep_ALL:MOLTYPE_NOT_MRNA::4 molecule types are not set as mRNA. genome:sample (length 720580) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560) DiscRep_ALL:TECHNIQUE_NOT_TSA::4 technique are not set as TSA genome:sample (length 720580) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560) DiscRep_ALL:MISSING_STRUCTURED_COMMENT::4 sequences do not include structured comments. genome:sample (length 720580) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560) DiscRep_ALL:MISSING_PROJECT::73 sequences do not include project. genome:sample (length 720580) genome:ncbi:FUN_000001-T1 (length 458) genome:ncbi:FUN_000002-T1 (length 375) genome:ncbi:FUN_000003-T1 (length 957) genome:ncbi:FUN_000004-T1 (length 2136) genome:ncbi:FUN_000005-T1 (length 315) genome:ncbi:FUN_000006-T1 (length 278) genome:ncbi:FUN_000007-T1 (length 365) genome:ncbi:FUN_000008-T1 (length 171) genome:ncbi:FUN_000009-T1 (length 132) genome:ncbi:FUN_000010-T1 (length 338) genome:ncbi:FUN_000011-T1 (length 294) genome:ncbi:FUN_000012-T1 (length 341) genome:ncbi:FUN_000013-T1 (length 589) genome:ncbi:FUN_000014-T1 (length 146) genome:ncbi:FUN_000015-T1 (length 576) genome:ncbi:FUN_000016-T1 (length 139) genome:ncbi:FUN_000017-T1 (length 224) genome:ncbi:FUN_000018-T1 (length 151) genome:ncbi:FUN_000019-T1 (length 68) genome:ncbi:FUN_000020-T1 (length 182) genome:ncbi:FUN_000021-T1 (length 193) genome:ncbi:FUN_000022-T1 (length 550) genome:ncbi:FUN_000023-T1 (length 515) genome:ncbi:FUN_000024-T1 (length 96) genome:ncbi:FUN_000025-T1 (length 277) genome:ncbi:FUN_000026-T1 (length 406) genome:ncbi:FUN_000027-T1 (length 635) genome:ncbi:FUN_000028-T1 (length 1138) genome:ncbi:FUN_000029-T1 (length 307) genome:ncbi:FUN_000030-T1 (length 229) genome:ncbi:FUN_000031-T1 (length 397) genome:ncbi:FUN_000032-T1 (length 430) genome:ncbi:FUN_000033-T1 (length 214) genome:ncbi:FUN_000034-T1 (length 67) genome:ncbi:FUN_000035-T1 (length 506) genome:ncbi:FUN_000036-T1 (length 143) genome:ncbi:FUN_000037-T1 (length 785) genome:ncbi:FUN_000038-T1 (length 198) genome:ncbi:FUN_000039-T1 (length 501) genome:ncbi:FUN_000040-T1 (length 282) genome:ncbi:FUN_000041-T1 (length 562) genome:ncbi:FUN_000042-T1 (length 186) genome:ncbi:FUN_000043-T1 (length 215) genome:ncbi:FUN_000044-T1 (length 170) genome:ncbi:FUN_000045-T1 (length 550) genome:ncbi:FUN_000046-T1 (length 392) genome:ncbi:FUN_000047-T1 (length 231) genome:ncbi:FUN_000048-T1 (length 179) genome:ncbi:FUN_000049-T1 (length 280) genome:ncbi:FUN_000050-T1 (length 117) genome:ncbi:FUN_000051-T1 (length 120) genome:ncbi:FUN_000052-T1 (length 209) genome:ncbi:FUN_000053-T1 (length 132) genome:ncbi:FUN_000054-T1 (length 268) genome:ncbi:FUN_000055-T1 (length 687) genome:ncbi:FUN_000056-T1 (length 207) genome:ncbi:FUN_000057-T1 (length 131) genome:ncbi:FUN_000058-T1 (length 527) genome:ncbi:FUN_000059-T1 (length 271) genome:ncbi:FUN_000060-T1 (length 1569) genome:ncbi:FUN_000062-T1 (length 477) genome:ncbi:FUN_000063-T1 (length 1091) genome:ncbi:FUN_000064-T1 (length 157) genome:ncbi:FUN_000065-T1 (length 394) genome:ncbi:FUN_000066-T1 (length 293) genome:ncbi:FUN_000067-T1 (length 370) genome:ncbi:FUN_000068-T1 (length 438) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560) genome:ncbi:FUN_000069-T1 (length 458) genome:ncbi:FUN_000070-T1 (length 375) DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same) DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing) DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::4 Molinfos are missing field technique genome:sample (length 720580) genome:sample2 (length 2030) genome:sample3 (length 2100) genome:sample4 (length 7560)