view test-data/predict_scratch/Genus_species.gff3 @ 2:aa19eaac7d4b draft

"planemo upload commit 9cbeba115a6e13dd4c007065b7d77dcb400f72fb"
author iuc
date Thu, 25 Nov 2021 09:43:01 +0000
parents a5baa4ff168d
children
line wrap: on
line source

##gff-version 3
sample	funannotate	gene	1092	1466	.	-	.	ID=FUN_000001;
sample	funannotate	mRNA	1092	1466	.	-	.	ID=FUN_000001-T1;Parent=FUN_000001;product=hypothetical protein;
sample	funannotate	exon	1092	1466	.	-	.	ID=FUN_000001-T1.exon1;Parent=FUN_000001-T1;
sample	funannotate	CDS	1092	1466	.	-	0	ID=FUN_000001-T1.cds;Parent=FUN_000001-T1;
sample	funannotate	gene	2565	3142	.	-	.	ID=FUN_000002;
sample	funannotate	mRNA	2565	3142	.	-	.	ID=FUN_000002-T1;Parent=FUN_000002;product=hypothetical protein;
sample	funannotate	exon	3138	3142	.	-	.	ID=FUN_000002-T1.exon1;Parent=FUN_000002-T1;
sample	funannotate	exon	2883	3004	.	-	.	ID=FUN_000002-T1.exon2;Parent=FUN_000002-T1;
sample	funannotate	exon	2565	2686	.	-	.	ID=FUN_000002-T1.exon3;Parent=FUN_000002-T1;
sample	funannotate	CDS	3138	3142	.	-	0	ID=FUN_000002-T1.cds;Parent=FUN_000002-T1;
sample	funannotate	CDS	2883	3004	.	-	1	ID=FUN_000002-T1.cds;Parent=FUN_000002-T1;
sample	funannotate	CDS	2565	2686	.	-	2	ID=FUN_000002-T1.cds;Parent=FUN_000002-T1;
sample	funannotate	gene	4248	5802	.	-	.	ID=FUN_000003;
sample	funannotate	mRNA	4248	5802	.	-	.	ID=FUN_000003-T1;Parent=FUN_000003;product=hypothetical protein;
sample	funannotate	exon	5797	5802	.	-	.	ID=FUN_000003-T1.exon1;Parent=FUN_000003-T1;
sample	funannotate	exon	4937	5539	.	-	.	ID=FUN_000003-T1.exon2;Parent=FUN_000003-T1;
sample	funannotate	exon	4248	4742	.	-	.	ID=FUN_000003-T1.exon3;Parent=FUN_000003-T1;
sample	funannotate	CDS	5797	5802	.	-	0	ID=FUN_000003-T1.cds;Parent=FUN_000003-T1;
sample	funannotate	CDS	4937	5539	.	-	0	ID=FUN_000003-T1.cds;Parent=FUN_000003-T1;
sample	funannotate	CDS	4248	4742	.	-	0	ID=FUN_000003-T1.cds;Parent=FUN_000003-T1;
sample	funannotate	gene	7691	10664	.	-	.	ID=FUN_000004;
sample	funannotate	mRNA	7691	10664	.	-	.	ID=FUN_000004-T1;Parent=FUN_000004;product=hypothetical protein;
sample	funannotate	exon	10657	10664	.	-	.	ID=FUN_000004-T1.exon1;Parent=FUN_000004-T1;
sample	funannotate	exon	8707	10499	.	-	.	ID=FUN_000004-T1.exon2;Parent=FUN_000004-T1;
sample	funannotate	exon	7691	8385	.	-	.	ID=FUN_000004-T1.exon3;Parent=FUN_000004-T1;
sample	funannotate	CDS	10657	10664	.	-	0	ID=FUN_000004-T1.cds;Parent=FUN_000004-T1;
sample	funannotate	CDS	8707	10499	.	-	1	ID=FUN_000004-T1.cds;Parent=FUN_000004-T1;
sample	funannotate	CDS	7691	8385	.	-	2	ID=FUN_000004-T1.cds;Parent=FUN_000004-T1;
sample	funannotate	gene	14247	15214	.	-	.	ID=FUN_000005;
sample	funannotate	mRNA	14247	15214	.	-	.	ID=FUN_000005-T1;Parent=FUN_000005;product=hypothetical protein;
sample	funannotate	exon	15209	15214	.	-	.	ID=FUN_000005-T1.exon1;Parent=FUN_000005-T1;
sample	funannotate	exon	14247	14648	.	-	.	ID=FUN_000005-T1.exon2;Parent=FUN_000005-T1;
sample	funannotate	CDS	15209	15214	.	-	0	ID=FUN_000005-T1.cds;Parent=FUN_000005-T1;
sample	funannotate	CDS	14247	14648	.	-	0	ID=FUN_000005-T1.cds;Parent=FUN_000005-T1;
sample	funannotate	gene	15539	16619	.	+	.	ID=FUN_000006;
sample	funannotate	mRNA	15539	16619	.	+	.	ID=FUN_000006-T1;Parent=FUN_000006;product=hypothetical protein;
sample	funannotate	exon	15539	15543	.	+	.	ID=FUN_000006-T1.exon1;Parent=FUN_000006-T1;
sample	funannotate	exon	15646	15919	.	+	.	ID=FUN_000006-T1.exon2;Parent=FUN_000006-T1;
sample	funannotate	exon	16485	16619	.	+	.	ID=FUN_000006-T1.exon3;Parent=FUN_000006-T1;
sample	funannotate	CDS	15539	15543	.	+	0	ID=FUN_000006-T1.cds;Parent=FUN_000006-T1;
sample	funannotate	CDS	15646	15919	.	+	1	ID=FUN_000006-T1.cds;Parent=FUN_000006-T1;
sample	funannotate	CDS	16485	16619	.	+	0	ID=FUN_000006-T1.cds;Parent=FUN_000006-T1;
sample	funannotate	gene	18358	21705	.	-	.	ID=FUN_000007;
sample	funannotate	mRNA	18358	21705	.	-	.	ID=FUN_000007-T1;Parent=FUN_000007;product=hypothetical protein;
sample	funannotate	exon	21700	21705	.	-	.	ID=FUN_000007-T1.exon1;Parent=FUN_000007-T1;
sample	funannotate	exon	19638	21515	.	-	.	ID=FUN_000007-T1.exon2;Parent=FUN_000007-T1;
sample	funannotate	exon	18358	19482	.	-	.	ID=FUN_000007-T1.exon3;Parent=FUN_000007-T1;
sample	funannotate	CDS	21700	21705	.	-	0	ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
sample	funannotate	CDS	19638	21515	.	-	0	ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
sample	funannotate	CDS	18358	19482	.	-	0	ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
sample	funannotate	gene	34843	35679	.	-	.	ID=FUN_000008;
sample	funannotate	mRNA	34843	35679	.	-	.	ID=FUN_000008-T1;Parent=FUN_000008;product=hypothetical protein;
sample	funannotate	exon	34843	35679	.	-	.	ID=FUN_000008-T1.exon1;Parent=FUN_000008-T1;
sample	funannotate	CDS	34843	35679	.	-	0	ID=FUN_000008-T1.cds;Parent=FUN_000008-T1;
sample	funannotate	gene	40223	44130	.	+	.	ID=FUN_000009;
sample	funannotate	mRNA	40223	44130	.	+	.	ID=FUN_000009-T1;Parent=FUN_000009;product=hypothetical protein;
sample	funannotate	exon	40223	40396	.	+	.	ID=FUN_000009-T1.exon1;Parent=FUN_000009-T1;
sample	funannotate	exon	40659	41193	.	+	.	ID=FUN_000009-T1.exon2;Parent=FUN_000009-T1;
sample	funannotate	exon	41707	42080	.	+	.	ID=FUN_000009-T1.exon3;Parent=FUN_000009-T1;
sample	funannotate	exon	43409	43609	.	+	.	ID=FUN_000009-T1.exon4;Parent=FUN_000009-T1;
sample	funannotate	exon	43678	44130	.	+	.	ID=FUN_000009-T1.exon5;Parent=FUN_000009-T1;
sample	funannotate	CDS	40223	40396	.	+	0	ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
sample	funannotate	CDS	40659	41193	.	+	0	ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
sample	funannotate	CDS	41707	42080	.	+	2	ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
sample	funannotate	CDS	43409	43609	.	+	0	ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
sample	funannotate	CDS	43678	44130	.	+	0	ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
sample	funannotate	gene	87202	88320	.	+	.	ID=FUN_000010;
sample	funannotate	mRNA	87202	88320	.	+	.	ID=FUN_000010-T1;Parent=FUN_000010;product=hypothetical protein;
sample	funannotate	exon	87202	87207	.	+	.	ID=FUN_000010-T1.exon1;Parent=FUN_000010-T1;
sample	funannotate	exon	88054	88320	.	+	.	ID=FUN_000010-T1.exon2;Parent=FUN_000010-T1;
sample	funannotate	CDS	87202	87207	.	+	0	ID=FUN_000010-T1.cds;Parent=FUN_000010-T1;
sample	funannotate	CDS	88054	88320	.	+	0	ID=FUN_000010-T1.cds;Parent=FUN_000010-T1;
sample	funannotate	gene	102510	106221	.	-	.	ID=FUN_000011;
sample	funannotate	mRNA	102510	106221	.	-	.	ID=FUN_000011-T1;Parent=FUN_000011;product=hypothetical protein;
sample	funannotate	exon	106216	106221	.	-	.	ID=FUN_000011-T1.exon1;Parent=FUN_000011-T1;
sample	funannotate	exon	104258	104632	.	-	.	ID=FUN_000011-T1.exon2;Parent=FUN_000011-T1;
sample	funannotate	exon	103696	103947	.	-	.	ID=FUN_000011-T1.exon3;Parent=FUN_000011-T1;
sample	funannotate	exon	103229	103618	.	-	.	ID=FUN_000011-T1.exon4;Parent=FUN_000011-T1;
sample	funannotate	exon	102510	103151	.	-	.	ID=FUN_000011-T1.exon5;Parent=FUN_000011-T1;
sample	funannotate	CDS	106216	106221	.	-	0	ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
sample	funannotate	CDS	104258	104632	.	-	0	ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
sample	funannotate	CDS	103696	103947	.	-	0	ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
sample	funannotate	CDS	103229	103618	.	-	0	ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
sample	funannotate	CDS	102510	103151	.	-	0	ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
sample	funannotate	gene	167121	169212	.	+	.	ID=FUN_000012;
sample	funannotate	mRNA	167121	169212	.	+	.	ID=FUN_000012-T1;Parent=FUN_000012;product=hypothetical protein;
sample	funannotate	exon	167121	168069	.	+	.	ID=FUN_000012-T1.exon1;Parent=FUN_000012-T1;
sample	funannotate	exon	168722	169212	.	+	.	ID=FUN_000012-T1.exon2;Parent=FUN_000012-T1;
sample	funannotate	CDS	167121	168069	.	+	0	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
sample	funannotate	CDS	168722	169212	.	+	2	ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
sample	funannotate	gene	180262	180579	.	+	.	ID=FUN_000013;
sample	funannotate	mRNA	180262	180579	.	+	.	ID=FUN_000013-T1;Parent=FUN_000013;product=hypothetical protein;
sample	funannotate	exon	180262	180267	.	+	.	ID=FUN_000013-T1.exon1;Parent=FUN_000013-T1;
sample	funannotate	exon	180400	180579	.	+	.	ID=FUN_000013-T1.exon2;Parent=FUN_000013-T1;
sample	funannotate	CDS	180262	180267	.	+	0	ID=FUN_000013-T1.cds;Parent=FUN_000013-T1;
sample	funannotate	CDS	180400	180579	.	+	0	ID=FUN_000013-T1.cds;Parent=FUN_000013-T1;
sample	funannotate	gene	208619	210553	.	-	.	ID=FUN_000014;
sample	funannotate	mRNA	208619	210553	.	-	.	ID=FUN_000014-T1;Parent=FUN_000014;product=hypothetical protein;
sample	funannotate	exon	210548	210553	.	-	.	ID=FUN_000014-T1.exon1;Parent=FUN_000014-T1;
sample	funannotate	exon	209053	210474	.	-	.	ID=FUN_000014-T1.exon2;Parent=FUN_000014-T1;
sample	funannotate	exon	208619	208645	.	-	.	ID=FUN_000014-T1.exon3;Parent=FUN_000014-T1;
sample	funannotate	CDS	210548	210553	.	-	0	ID=FUN_000014-T1.cds;Parent=FUN_000014-T1;
sample	funannotate	CDS	209053	210474	.	-	0	ID=FUN_000014-T1.cds;Parent=FUN_000014-T1;
sample	funannotate	CDS	208619	208645	.	-	0	ID=FUN_000014-T1.cds;Parent=FUN_000014-T1;
sample4	funannotate	gene	1092	1466	.	-	.	ID=FUN_000015;
sample4	funannotate	mRNA	1092	1466	.	-	.	ID=FUN_000015-T1;Parent=FUN_000015;product=hypothetical protein;
sample4	funannotate	exon	1092	1466	.	-	.	ID=FUN_000015-T1.exon1;Parent=FUN_000015-T1;
sample4	funannotate	CDS	1092	1466	.	-	0	ID=FUN_000015-T1.cds;Parent=FUN_000015-T1;
sample4	funannotate	gene	2126	3537	.	+	.	ID=FUN_000016;
sample4	funannotate	mRNA	2126	3537	.	+	.	ID=FUN_000016-T1;Parent=FUN_000016;product=hypothetical protein;
sample4	funannotate	exon	2126	2199	.	+	.	ID=FUN_000016-T1.exon1;Parent=FUN_000016-T1;
sample4	funannotate	exon	2258	3224	.	+	.	ID=FUN_000016-T1.exon2;Parent=FUN_000016-T1;
sample4	funannotate	exon	3284	3537	.	+	.	ID=FUN_000016-T1.exon3;Parent=FUN_000016-T1;
sample4	funannotate	CDS	2126	2199	.	+	0	ID=FUN_000016-T1.cds;Parent=FUN_000016-T1;
sample4	funannotate	CDS	2258	3224	.	+	1	ID=FUN_000016-T1.cds;Parent=FUN_000016-T1;
sample4	funannotate	CDS	3284	3537	.	+	0	ID=FUN_000016-T1.cds;Parent=FUN_000016-T1;