Mercurial > repos > iuc > funannotate_compare

comparison funannotate_compare.xml @ 2:3187e8a44739 draft

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"planemo upload commit 9cbeba115a6e13dd4c007065b7d77dcb400f72fb"
author iuc
date Thu, 25 Nov 2021 09:43:48 +0000
parents 857f7ac611e1
children 563a19373357
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1:e2e43248dd18 2:3187e8a44739
85 <when value="iqtree" /> 85 <when value="iqtree" />
86 <when value="raxml"> 86 <when value="raxml">
87 <param argument="--bootstrap" type="integer" value="100" label="Number of boostrap replicates to run with RAxML" /> 87 <param argument="--bootstrap" type="integer" value="100" label="Number of boostrap replicates to run with RAxML" />
88 </when> 88 </when>
89 </conditional> 89 </conditional>
90
91 <!-- Need this to change path in the test funannotate_db -->
92 <param type="hidden" name="uglyTestingHack" value="" />
93 </inputs> 90 </inputs>
94 <outputs> 91 <outputs>
95 <data name='output' format='html' label="${tool.name} on ${on_string}: report" /> 92 <data name='output' format='html' label="${tool.name} on ${on_string}: report" />
96 </outputs> 93 </outputs>
97 <tests> 94 <tests>
98 <test> 95 <test>
99 <param name="input" value="compare/Genus_species.gbk,compare/Other_species.gbk,compare/Other_beast.gbk,compare/Yet_another.gbk" /> 96 <param name="input" value="compare/Genus_species.gbk,compare/Other_species.gbk,compare/Other_beast.gbk,compare/Yet_another.gbk" />
100 <param name="database" value="2021-07-20-120000" /> 97 <param name="database" value="2021-07-20-120000" />
101 <param name="outputs" value="gbk" />
102 <conditional name="ml"> 98 <conditional name="ml">
103 <param name="ml_method" value="raxml" /> 99 <param name="ml_method" value="raxml" />
104 </conditional> 100 </conditional>
105 <output name="output"> 101 <output name="output">
106 <assert_contents> 102 <assert_contents>