Mercurial > repos > iuc > funannotate_predict

annotate README.md @ 11:f77d7b685bb3 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit cb8c31569524d18872950ac43d389bf6c6931a3c
author iuc
date Mon, 11 Dec 2023 19:19:49 +0000
parents 40b87aef5241
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
1 # Funannotate
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
2
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
3 Funannotate can use GeneMark to predict gene, but due to licensing issues, we are not allowed to distribute GeneMark automatically.
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
4
40b87aef5241 "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
parents:
diff changeset
5 If you want to use it, the Galaxy administrator needs to install it GeneMark following the instructions on https://github.com/nextgenusfs/funannotate, and set the `GENEMARK_PATH` variable on the job destination.