Mercurial > repos > iuc > funannotate_sort

annotate test-data/predict_augustus/Genus_species.stats.json @ 10:d77fdcca400e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 9e3708d04faea0f1be4ea8918e859d6f2c7eb31d
author iuc
date Wed, 26 Jun 2024 09:40:19 +0000
parents 998b719a94cb
children
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1 {
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2 "format": "annotation",
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3 "command": "/home/abretaud/miniconda3/envs/__funannotate@1.8.7/bin/funannotate predict --input /tmp/tmpkgev4773/files/c/e/8/dataset_ce85d0fa-1534-47df-8c1e-5f0a5c1b82f0.dat --out output --database /home/abretaud/.planemo/planemo_tmp__fmxm4ll/test-data/funannotate_db --species Genus species --isolate --strain --organism other --ploidy 1 --SeqCenter CFMR --SeqAccession 12345 --name FUN_ --numbering 1 --p2g_pident 80 --p2g_prefilter diamond --augustus_species fly --min_training_models 200 --busco_seed_species fly --busco_db insecta --evm-partition-interval 1500 --min_intronlen 10 --max_intronlen 3000 --min_protlen 50 --repeat_filter overlap blast --cpus 1",
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4 "organism": "Genus_species",
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5 "software": {
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6 "name": "funannotate",
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7 "version": "1.8.7",
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8 "date": "2021-07-21",
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9 "resources": {
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13 "date": "2017-10-04",
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53 "type": "xml",
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119 }