Mercurial > repos > iuc > funannotate_sort

diff test-data/predict_bam/Genus_species.tbl @ 0:998b719a94cb draft

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"planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
author iuc
date Thu, 26 Aug 2021 06:56:18 +0000
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/predict_bam/Genus_species.tbl	Thu Aug 26 06:56:18 2021 +0000
@@ -0,0 +1,276 @@
+>Feature sample
+1	215740	REFERENCE
+			CFMR	12345
+<2331	3254	gene
+			locus_tag	FUN_000001
+<2331	3254	mRNA
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000001-T1_mrna
+			protein_id	gnl|ncbi|FUN_000001-T1
+<2331	3254	CDS
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000001-T1_mrna
+			protein_id	gnl|ncbi|FUN_000001-T1
+5802	4883	gene
+			locus_tag	FUN_000002
+5802	5797	mRNA
+5539	4883
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000002-T1_mrna
+			protein_id	gnl|ncbi|FUN_000002-T1
+5802	5797	CDS
+5539	4883
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000002-T1_mrna
+			protein_id	gnl|ncbi|FUN_000002-T1
+10557	8696	gene
+			locus_tag	FUN_000003
+10557	10549	mRNA
+10462	8696
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000003-T1_mrna
+			protein_id	gnl|ncbi|FUN_000003-T1
+10557	10549	CDS
+10462	8696
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000003-T1_mrna
+			protein_id	gnl|ncbi|FUN_000003-T1
+15214	14247	gene
+			locus_tag	FUN_000004
+15214	15209	mRNA
+14648	14247
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000004-T1_mrna
+			protein_id	gnl|ncbi|FUN_000004-T1
+15214	15209	CDS
+14648	14247
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000004-T1_mrna
+			protein_id	gnl|ncbi|FUN_000004-T1
+21705	19533	gene
+			locus_tag	FUN_000005
+21705	21700	mRNA
+21515	19533
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000005-T1_mrna
+			protein_id	gnl|ncbi|FUN_000005-T1
+21705	21700	CDS
+21515	19533
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000005-T1_mrna
+			protein_id	gnl|ncbi|FUN_000005-T1
+35679	34843	gene
+			locus_tag	FUN_000006
+35679	34843	mRNA
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000006-T1_mrna
+			protein_id	gnl|ncbi|FUN_000006-T1
+35679	34843	CDS
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000006-T1_mrna
+			protein_id	gnl|ncbi|FUN_000006-T1
+40223	44130	gene
+			locus_tag	FUN_000007
+40223	40396	mRNA
+40659	41193
+41707	42080
+43409	43609
+43678	44130
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000007-T1_mrna
+			protein_id	gnl|ncbi|FUN_000007-T1
+40223	40396	CDS
+40659	41193
+41707	42080
+43409	43609
+43678	44130
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000007-T1_mrna
+			protein_id	gnl|ncbi|FUN_000007-T1
+47195	45527	gene
+			locus_tag	FUN_000008
+47195	46753	mRNA
+46330	46214
+46157	45527
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000008-T1_mrna
+			protein_id	gnl|ncbi|FUN_000008-T1
+47195	46753	CDS
+46330	46214
+46157	45527
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000008-T1_mrna
+			protein_id	gnl|ncbi|FUN_000008-T1
+79527	78685	gene
+			locus_tag	FUN_000009
+79527	79519	mRNA
+79068	78685
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000009-T1_mrna
+			protein_id	gnl|ncbi|FUN_000009-T1
+79527	79519	CDS
+79068	78685
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000009-T1_mrna
+			protein_id	gnl|ncbi|FUN_000009-T1
+87202	88320	gene
+			locus_tag	FUN_000010
+87202	87207	mRNA
+88054	88320
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000010-T1_mrna
+			protein_id	gnl|ncbi|FUN_000010-T1
+87202	87207	CDS
+88054	88320
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000010-T1_mrna
+			protein_id	gnl|ncbi|FUN_000010-T1
+133587	137862	gene
+			locus_tag	FUN_000011
+133587	134504	mRNA
+134720	135510
+135569	136284
+137516	137862
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000011-T1_mrna
+			protein_id	gnl|ncbi|FUN_000011-T1
+133587	134504	CDS
+134720	135510
+135569	136284
+137516	137862
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000011-T1_mrna
+			protein_id	gnl|ncbi|FUN_000011-T1
+144294	164495	gene
+			locus_tag	FUN_000012
+144294	144551	mRNA
+149012	149244
+149367	149588
+149654	149897
+149952	150112
+150174	150248
+151966	152072
+152314	152429
+152496	152751
+153296	153630
+153689	155122
+155789	158975
+159190	164495
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000012-T1_mrna
+			protein_id	gnl|ncbi|FUN_000012-T1
+144294	144551	CDS
+149012	149244
+149367	149588
+149654	149897
+149952	150112
+150174	150248
+151966	152072
+152314	152429
+152496	152751
+153296	153630
+153689	155122
+155789	158975
+159190	164495
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000012-T1_mrna
+			protein_id	gnl|ncbi|FUN_000012-T1
+167121	169212	gene
+			locus_tag	FUN_000013
+167121	168360	mRNA
+168722	169212
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000013-T1_mrna
+			protein_id	gnl|ncbi|FUN_000013-T1
+167121	168360	CDS
+168722	169212
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000013-T1_mrna
+			protein_id	gnl|ncbi|FUN_000013-T1
+178916	176699	gene
+			locus_tag	FUN_000014
+178916	178873	mRNA
+177172	176887
+176824	176699
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000014-T1_mrna
+			protein_id	gnl|ncbi|FUN_000014-T1
+178916	178873	CDS
+177172	176887
+176824	176699
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000014-T1_mrna
+			protein_id	gnl|ncbi|FUN_000014-T1
+192004	194669	gene
+			locus_tag	FUN_000015
+192004	192067	mRNA
+193549	193658
+194041	194455
+194518	194669
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000015-T1_mrna
+			protein_id	gnl|ncbi|FUN_000015-T1
+192004	192067	CDS
+193549	193658
+194041	194455
+194518	194669
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000015-T1_mrna
+			protein_id	gnl|ncbi|FUN_000015-T1
+210553	209044	gene
+			locus_tag	FUN_000016
+210553	210548	mRNA
+210474	209044
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000016-T1_mrna
+			protein_id	gnl|ncbi|FUN_000016-T1
+210553	210548	CDS
+210474	209044
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000016-T1_mrna
+			protein_id	gnl|ncbi|FUN_000016-T1
+>Feature sample4
+1	7560	REFERENCE
+			CFMR	12345
+1466	1092	gene
+			locus_tag	FUN_000017
+1466	1092	mRNA
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000017-T1_mrna
+			protein_id	gnl|ncbi|FUN_000017-T1
+1466	1092	CDS
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000017-T1_mrna
+			protein_id	gnl|ncbi|FUN_000017-T1
+2126	>3537	gene
+			locus_tag	FUN_000018
+2126	2199	mRNA
+2258	3224
+3284	>3537
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000018-T1_mrna
+			protein_id	gnl|ncbi|FUN_000018-T1
+2126	2199	CDS
+2258	3224
+3284	>3537
+			codon_start	1
+			product	hypothetical protein
+			transcript_id	gnl|ncbi|FUN_000018-T1_mrna
+			protein_id	gnl|ncbi|FUN_000018-T1