Mercurial > repos > iuc > gatk2
comparison tool_dependencies.xml @ 0:340633249b3d draft
Uploaded
| author | bgruening |
|---|---|
| date | Mon, 02 Dec 2013 06:18:36 -0500 |
| parents | |
| children | f760c0de8e3a |
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| -1:000000000000 | 0:340633249b3d |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <set_environment version="1.0"> | |
| 4 <environment_variable action="set_to" name="GATK2_PATH">/please set the path to your GATK2 dir in the corresponding env.sh file/</environment_variable> | |
| 5 </set_environment> | |
| 6 <!-- | |
| 7 Use GATK2_SITE_OPTIONS to set additional parameters that should be inserted in every GATK2 call. | |
| 8 The intended use case was to prohibit GATK2 to collect and send data. | |
| 9 For example: | |
| 10 | |
| 11 -et "NO_ET" -K "/data/gatk2_key_file" ##ET no phone home | |
| 12 --> | |
| 13 <set_environment version="1.0"> | |
| 14 <environment_variable action="set_to" name="GATK2_SITE_OPTIONS" /> | |
| 15 </set_environment> | |
| 16 | |
| 17 <package name="samtools" version="0.1.19"> | |
| 18 <repository changeset_revision="00e17a794a2e" name="package_samtools_0_1_19" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
| 19 </package> | |
| 20 </tool_dependency> |