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comparison base_recalibrator.xml @ 4:f244b8209eb8 draft

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bug fix release
author iuc
date Mon, 25 Aug 2014 17:43:11 -0400
parents 8bcc13094767
children 35c00763cb5c
comparison
equal deleted inserted replaced
3:2553f84b8174 4:f244b8209eb8
1 <tool id="gatk2_base_recalibrator" name="Base Recalibrator" version="0.0.7"> 1 <tool id="gatk2_base_recalibrator" name="Base Recalibrator" version="@VERSION@.0">
2 <description>calculates covariates used to recalibrate base quality scores of reads</description> 2 <description>calculates covariates used to recalibrate base quality scores of reads</description>
3 <expand macro="requirements" /> 3 <expand macro="requirements" />
4 <macros> 4 <macros>
5 <import>gatk2_macros.xml</import> 5 <import>gatk2_macros.xml</import>
6 </macros> 6 </macros>
300 standard_covs Use the standard set of covariates in addition to the ones listed using the -cov argument 300 standard_covs Use the standard set of covariates in addition to the ones listed using the -cov argument
301 run_without_dbsnp_potentially_ruining_quality If specified, allows the recalibrator to be used without a dbsnp rod. Very unsafe and for expert users only. 301 run_without_dbsnp_potentially_ruining_quality If specified, allows the recalibrator to be used without a dbsnp rod. Very unsafe and for expert users only.
302 302
303 @CITATION_SECTION@ 303 @CITATION_SECTION@
304 </help> 304 </help>
305 <expand macro="citations" />
305 </tool> 306 </tool>