Mercurial > repos > iuc > gatk2

comparison variant_apply_recalibration.xml @ 4:f244b8209eb8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
bug fix release
author iuc
date Mon, 25 Aug 2014 17:43:11 -0400
parents 340633249b3d
children 35c00763cb5c
comparison
equal deleted inserted replaced
3:2553f84b8174 4:f244b8209eb8
1 <tool id="gatk2_variant_apply_recalibration" name="Apply Variant Recalibration" version="0.0.7"> 1 <tool id="gatk2_variant_apply_recalibration" name="Apply Variant Recalibration" version="@VERSION@.0">
2 <description></description> 2 <description></description>
3 <expand macro="requirements" /> 3 <expand macro="requirements" />
4 <macros> 4 <macros>
5 <import>gatk2_macros.xml</import> 5 <import>gatk2_macros.xml</import>
6 </macros> 6 </macros>
133 ignore_filter If specified the optimizer will use variants even if the specified filter name is marked in the input VCF file 133 ignore_filter If specified the optimizer will use variants even if the specified filter name is marked in the input VCF file
134 mode Recalibration mode to employ: 1.) SNP for recalibrating only SNPs (emitting indels untouched in the output VCF); 2.) INDEL for indels; and 3.) BOTH for recalibrating both SNPs and indels simultaneously. (SNP|INDEL|BOTH) 134 mode Recalibration mode to employ: 1.) SNP for recalibrating only SNPs (emitting indels untouched in the output VCF); 2.) INDEL for indels; and 3.) BOTH for recalibrating both SNPs and indels simultaneously. (SNP|INDEL|BOTH)
135 135
136 @CITATION_SECTION@ 136 @CITATION_SECTION@
137 </help> 137 </help>
138 <expand macro="citations" />
138 </tool> 139 </tool>