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diff test-data/gatk/gatk_analyze_covariates/gatk_analyze_covariates_out_1.log.contains @ 0:340633249b3d draft

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author bgruening
date Mon, 02 Dec 2013 06:18:36 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gatk/gatk_analyze_covariates/gatk_analyze_covariates_out_1.log.contains	Mon Dec 02 06:18:36 2013 -0500
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+Program Name: org.broadinstitute.sting.analyzecovariates.AnalyzeCovariates
+Reading in input csv file...
+...Done!
+Writing out intermediate tables for R...
+Writing out data tables for read group: A Fake phiX Sample	with 340 observations	and aggregate residual error = -9.136
+...Done!
+Calling analysis R scripts and writing out figures...
+Analyzing read group: A Fake phiX Sample
+...Done!