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diff test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.log.contains @ 0:340633249b3d draft

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author bgruening
date Mon, 02 Dec 2013 06:18:36 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.log.contains	Mon Dec 02 06:18:36 2013 -0500
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+Program Args: -T UnifiedGenotyper
+GenomeAnalysisEngine - Strictness is SILENT
+TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
+TraversalEngine -        Location processed.sites  runtime per.1M.sites completed total.runtime remaining
+UnifiedGenotyper - Visited bases                                5387
+UnifiedGenotyper - Callable bases                               5344
+UnifiedGenotyper - Confidently called bases                     5344
+UnifiedGenotyper - % callable bases of all loci                 99.202
+UnifiedGenotyper - % confidently called bases of all loci       99.202
+UnifiedGenotyper - % confidently called bases of callable loci  100.000
+UnifiedGenotyper - Actual calls made                            1
+TraversalEngine - Total runtime