Mercurial > repos > iuc > gatk2
diff tool_dependencies.xml @ 6:35c00763cb5c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gatk2 commit cf399638ebca4250bcc15f468238a9964de97b33
| author | iuc |
|---|---|
| date | Mon, 04 Jun 2018 05:38:15 -0400 |
| parents | f244b8209eb8 |
| children |
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--- a/tool_dependencies.xml Mon Aug 25 17:44:53 2014 -0400 +++ b/tool_dependencies.xml Mon Jun 04 05:38:15 2018 -0400 @@ -3,11 +3,11 @@ <set_environment version="1.0"> <environment_variable action="set_to" name="GATK2_PATH">/please set the path to your GATK2 dir in the corresponding env.sh file/</environment_variable> </set_environment> - <!-- + <!-- Use GATK2_SITE_OPTIONS to set additional parameters that should be inserted in every GATK2 call. The intended use case was to prohibit GATK2 to collect and send data. For example: - + -et "NO_ET" -K "/data/gatk2_key_file" ##ET no phone home --> <set_environment version="1.0"> @@ -15,12 +15,12 @@ </set_environment> <package name="samtools" version="0.1.19"> - <repository changeset_revision="923adc89c666" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="c9bd782f5342" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="picard" version="1.56.0"> - <repository changeset_revision="61e41d21cb6f" name="package_picard_1_56_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="99a28567c3a3" name="package_picard_1_56_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="ggplot2" version="0.9.3"> - <repository changeset_revision="87a27fc31fb5" name="package_r_ggplot2_0_9_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="07de191649b4" name="package_r_ggplot2_0_9_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>