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view test-data/gatk/gatk_count_covariates/gatk_count_covariates_out_1.log.contains @ 2:8bcc13094767 draft

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author iuc
date Sat, 18 Jan 2014 07:21:33 -0500
parents 340633249b3d
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GenomeAnalysisEngine - Strictness is SILENT
CountCovariatesWalker - The covariates being used here:
CountCovariatesWalker - 	ReadGroupCovariate
CountCovariatesWalker - 	QualityScoreCovariate
CountCovariatesWalker - 	CycleCovariate
CountCovariatesWalker - 	DinucCovariate
CountCovariatesWalker - 	HomopolymerCovariate
CountCovariatesWalker - 	MinimumNQSCovariate
CountCovariatesWalker - 	PositionCovariate
TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING] 
CountCovariatesWalker - Writing raw recalibration data...
CountCovariatesWalker - ...done!
TraversalEngine - Total runtime