Mercurial > repos > iuc > gatk4_mutect2
comparison test-data/Mutect2-out2.vcf @ 3:287c4af133e6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/gatk4 commit 7297efcf34a6262434c6b0f41243fbcb1947af80"
| author | iuc |
|---|---|
| date | Sun, 10 May 2020 17:58:00 -0400 |
| parents | fd2d6e035c3f |
| children |
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| 2:3be27a9a7313 | 3:287c4af133e6 |
|---|---|
| 4 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)"> | 4 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)"> |
| 5 ##FORMAT=<ID=F1R2,Number=R,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting each allele"> | 5 ##FORMAT=<ID=F1R2,Number=R,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting each allele"> |
| 6 ##FORMAT=<ID=F2R1,Number=R,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting each allele"> | 6 ##FORMAT=<ID=F2R1,Number=R,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting each allele"> |
| 7 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | 7 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> |
| 8 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | 8 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> |
| 9 ##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another"> | 9 ##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another; will always be heterozygous and is not intended to describe called alleles"> |
| 10 ##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group"> | 10 ##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group"> |
| 11 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification"> | 11 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification"> |
| 12 ##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phasing set (typically the position of the first variant in the set)"> | 12 ##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phasing set (typically the position of the first variant in the set)"> |
| 13 ##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias."> | 13 ##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias."> |
| 14 ##GATKCommandLine=<ID=Mutect2,CommandLine="Mutect2 --tumor-sample SRR8525881 --output output.vcf --input input.bam --reference reference.fa --QUIET true --f1r2-median-mq 50 --f1r2-min-bq 20 --f1r2-max-depth 200 --genotype-pon-sites false --genotype-germline-sites false --af-of-alleles-not-in-resource -1.0 --mitochondria-mode false --tumor-lod-to-emit 3.0 --initial-tumor-lod 2.0 --pcr-snv-qual 40 --pcr-indel-qual 40 --max-population-af 0.01 --downsampling-stride 1 --callable-depth 10 --max-suspicious-reads-per-alignment-start 0 --normal-lod 2.2 --ignore-itr-artifacts false --gvcf-lod-band -2.5 --gvcf-lod-band -2.0 --gvcf-lod-band -1.5 --gvcf-lod-band -1.0 --gvcf-lod-band -0.5 --gvcf-lod-band 0.0 --gvcf-lod-band 0.5 --gvcf-lod-band 1.0 --minimum-allele-fraction 0.0 --independent-mates false --disable-adaptive-pruning false --dont-trim-active-regions false --max-extension 25 --padding-around-indels 150 --padding-around-snps 20 --kmer-size 10 --kmer-size 25 --dont-increase-kmer-sizes-for-cycles false --allow-non-unique-kmers-in-ref false --num-pruning-samples 1 --min-dangling-branch-length 4 --recover-all-dangling-branches false --max-num-haplotypes-in-population 128 --min-pruning 2 --adaptive-pruning-initial-error-rate 0.001 --pruning-lod-threshold 2.302585092994046 --max-unpruned-variants 100 --debug-assembly false --debug-graph-transformations false --capture-assembly-failure-bam false --error-correct-reads false --kmer-length-for-read-error-correction 25 --min-observations-for-kmer-to-be-solid 20 --likelihood-calculation-engine PairHMM --base-quality-score-threshold 18 --pair-hmm-gap-continuation-penalty 10 --pair-hmm-implementation FASTEST_AVAILABLE --pcr-indel-model CONSERVATIVE --phred-scaled-global-read-mismapping-rate 45 --native-pair-hmm-threads 4 --native-pair-hmm-use-double-precision false --bam-writer-type CALLED_HAPLOTYPES --dont-use-soft-clipped-bases false --min-base-quality-score 10 --smith-waterman JAVA --emit-ref-confidence NONE --max-mnp-distance 1 --force-call-filtered-alleles false --min-assembly-region-size 50 --max-assembly-region-size 300 --assembly-region-padding 100 --max-reads-per-alignment-start 50 --active-probability-threshold 0.002 --max-prob-propagation-distance 50 --force-active false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays --disable-tool-default-read-filters false --max-read-length 2147483647 --min-read-length 30 --minimum-mapping-quality 20 --disable-tool-default-annotations false --enable-all-annotations false",Version="4.1.4.0",Date="November 15, 2019 4:25:08 PM EST"> | 14 ##GATKCommandLine=<ID=Mutect2,CommandLine="Mutect2 --tumor-sample SRR8525881 --output output.vcf --input tumor.bam --reference reference.fa --QUIET true --f1r2-median-mq 50 --f1r2-min-bq 20 --f1r2-max-depth 200 --genotype-pon-sites false --genotype-germline-sites false --af-of-alleles-not-in-resource -1.0 --mitochondria-mode false --tumor-lod-to-emit 3.0 --initial-tumor-lod 2.0 --pcr-snv-qual 40 --pcr-indel-qual 40 --max-population-af 0.01 --downsampling-stride 1 --callable-depth 10 --max-suspicious-reads-per-alignment-start 0 --normal-lod 2.2 --ignore-itr-artifacts false --gvcf-lod-band -2.5 --gvcf-lod-band -2.0 --gvcf-lod-band -1.5 --gvcf-lod-band -1.0 --gvcf-lod-band -0.5 --gvcf-lod-band 0.0 --gvcf-lod-band 0.5 --gvcf-lod-band 1.0 --minimum-allele-fraction 0.0 --independent-mates false --disable-adaptive-pruning false --kmer-size 10 --kmer-size 25 --dont-increase-kmer-sizes-for-cycles false --allow-non-unique-kmers-in-ref false --num-pruning-samples 1 --min-dangling-branch-length 4 --recover-all-dangling-branches false --max-num-haplotypes-in-population 128 --min-pruning 2 --adaptive-pruning-initial-error-rate 0.001 --pruning-lod-threshold 2.302585092994046 --max-unpruned-variants 100 --linked-de-bruijn-graph false --disable-artificial-haplotype-recovery false --debug-assembly false --debug-graph-transformations false --capture-assembly-failure-bam false --error-correction-log-odds -Infinity --error-correct-reads false --kmer-length-for-read-error-correction 25 --min-observations-for-kmer-to-be-solid 20 --base-quality-score-threshold 18 --pair-hmm-gap-continuation-penalty 10 --pair-hmm-implementation FASTEST_AVAILABLE --pcr-indel-model CONSERVATIVE --phred-scaled-global-read-mismapping-rate 45 --native-pair-hmm-threads 4 --native-pair-hmm-use-double-precision false --bam-writer-type CALLED_HAPLOTYPES --dont-use-soft-clipped-bases false --min-base-quality-score 10 --smith-waterman JAVA --emit-ref-confidence NONE --max-mnp-distance 1 --force-call-filtered-alleles false --allele-informative-reads-overlap-margin 2 --min-assembly-region-size 50 --max-assembly-region-size 300 --active-probability-threshold 0.002 --max-prob-propagation-distance 50 --force-active false --assembly-region-padding 100 --padding-around-indels 75 --padding-around-snps 20 --padding-around-strs 75 --max-reads-per-alignment-start 50 --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays --disable-tool-default-read-filters false --max-read-length 2147483647 --min-read-length 30 --minimum-mapping-quality 20 --disable-tool-default-annotations false --enable-all-annotations false",Version="4.1.7.0",Date="May 8, 2020 3:31:33 PM CEST"> |
| 15 ##INFO=<ID=AS_SB_TABLE,Number=1,Type=String,Description="Allele-specific forward/reverse read counts for strand bias tests. Includes the reference and alleles separated by |."> | |
| 16 ##INFO=<ID=AS_UNIQ_ALT_READ_COUNT,Number=A,Type=Integer,Description="Number of reads with unique start and mate end positions for each alt at a variant site"> | |
| 15 ##INFO=<ID=CONTQ,Number=1,Type=Float,Description="Phred-scaled qualities that alt allele are not due to contamination"> | 17 ##INFO=<ID=CONTQ,Number=1,Type=Float,Description="Phred-scaled qualities that alt allele are not due to contamination"> |
| 16 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered"> | 18 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered"> |
| 17 ##INFO=<ID=ECNT,Number=1,Type=Integer,Description="Number of events in this haplotype"> | 19 ##INFO=<ID=ECNT,Number=1,Type=Integer,Description="Number of events in this haplotype"> |
| 18 ##INFO=<ID=GERMQ,Number=1,Type=Integer,Description="Phred-scaled quality that alt alleles are not germline variants"> | 20 ##INFO=<ID=GERMQ,Number=1,Type=Integer,Description="Phred-scaled quality that alt alleles are not germline variants"> |
| 19 ##INFO=<ID=MBQ,Number=R,Type=Integer,Description="median base quality"> | 21 ##INFO=<ID=MBQ,Number=R,Type=Integer,Description="median base quality"> |
| 25 ##INFO=<ID=NLOD,Number=A,Type=Float,Description="Normal log 10 likelihood ratio of diploid het or hom alt genotypes"> | 27 ##INFO=<ID=NLOD,Number=A,Type=Float,Description="Normal log 10 likelihood ratio of diploid het or hom alt genotypes"> |
| 26 ##INFO=<ID=OCM,Number=1,Type=Integer,Description="Number of alt reads whose original alignment doesn't match the current contig."> | 28 ##INFO=<ID=OCM,Number=1,Type=Integer,Description="Number of alt reads whose original alignment doesn't match the current contig."> |
| 27 ##INFO=<ID=PON,Number=0,Type=Flag,Description="site found in panel of normals"> | 29 ##INFO=<ID=PON,Number=0,Type=Flag,Description="site found in panel of normals"> |
| 28 ##INFO=<ID=POPAF,Number=A,Type=Float,Description="negative log 10 population allele frequencies of alt alleles"> | 30 ##INFO=<ID=POPAF,Number=A,Type=Float,Description="negative log 10 population allele frequencies of alt alleles"> |
| 29 ##INFO=<ID=ROQ,Number=1,Type=Float,Description="Phred-scaled qualities that alt allele are not due to read orientation artifact"> | 31 ##INFO=<ID=ROQ,Number=1,Type=Float,Description="Phred-scaled qualities that alt allele are not due to read orientation artifact"> |
| 30 ##INFO=<ID=RPA,Number=.,Type=Integer,Description="Number of times tandem repeat unit is repeated, for each allele (including reference)"> | 32 ##INFO=<ID=RPA,Number=R,Type=Integer,Description="Number of times tandem repeat unit is repeated, for each allele (including reference)"> |
| 31 ##INFO=<ID=RU,Number=1,Type=String,Description="Tandem repeat unit (bases)"> | 33 ##INFO=<ID=RU,Number=1,Type=String,Description="Tandem repeat unit (bases)"> |
| 32 ##INFO=<ID=SEQQ,Number=1,Type=Integer,Description="Phred-scaled quality that alt alleles are not sequencing errors"> | 34 ##INFO=<ID=SEQQ,Number=1,Type=Integer,Description="Phred-scaled quality that alt alleles are not sequencing errors"> |
| 33 ##INFO=<ID=STR,Number=0,Type=Flag,Description="Variant is a short tandem repeat"> | 35 ##INFO=<ID=STR,Number=0,Type=Flag,Description="Variant is a short tandem repeat"> |
| 34 ##INFO=<ID=STRANDQ,Number=1,Type=Integer,Description="Phred-scaled quality of strand bias artifact"> | 36 ##INFO=<ID=STRANDQ,Number=1,Type=Integer,Description="Phred-scaled quality of strand bias artifact"> |
| 35 ##INFO=<ID=STRQ,Number=1,Type=Integer,Description="Phred-scaled quality that alt alleles in STRs are not polymerase slippage errors"> | 37 ##INFO=<ID=STRQ,Number=1,Type=Integer,Description="Phred-scaled quality that alt alleles in STRs are not polymerase slippage errors"> |
| 36 ##INFO=<ID=TLOD,Number=A,Type=Float,Description="Log 10 likelihood ratio score of variant existing versus not existing"> | 38 ##INFO=<ID=TLOD,Number=A,Type=Float,Description="Log 10 likelihood ratio score of variant existing versus not existing"> |
| 37 ##INFO=<ID=UNIQ_ALT_READ_COUNT,Number=1,Type=Integer,Description="Number of ALT reads with unique start and mate end positions at a variant site"> | |
| 38 ##MutectVersion=2.2 | 39 ##MutectVersion=2.2 |
| 39 ##contig=<ID=K03455,length=9719> | 40 ##contig=<ID=K03455,length=9719> |
| 40 ##filtering_status=Warning: unfiltered Mutect 2 calls. Please run FilterMutectCalls to remove false positives. | 41 ##filtering_status=Warning: unfiltered Mutect 2 calls. Please run FilterMutectCalls to remove false positives. |
| 41 ##source=Mutect2 | 42 ##source=Mutect2 |
| 42 ##tumor_sample=SRR8525881 | 43 ##tumor_sample=SRR8525881 |
| 43 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SRR8525881 | 44 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SRR8525881 |
| 44 K03455 4861 . A G . . DP=1;ECNT=13;MBQ=0,37;MFRL=0,400;MMQ=60,60;MPOS=10;POPAF=7.30;TLOD=3.88 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,1:0.667:1:0,1:0,0:0,0,1,0 | 45 K03455 4861 . A G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=13;MBQ=0,37;MFRL=0,400;MMQ=60,60;MPOS=10;POPAF=7.30;TLOD=3.88 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,1:0.667:1:0,1:0,0:0,0,1,0 |
| 45 K03455 4918 . G A . . DP=10;ECNT=13;MBQ=37,32;MFRL=282,328;MMQ=60,60;MPOS=19;POPAF=7.30;TLOD=17.51 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:4,6:0.583:10:2,1:2,3:3,1,1,5 | 46 K03455 4918 . G A . . AS_SB_TABLE=4,1|1,5;DP=11;ECNT=13;MBQ=35,32;MFRL=299,328;MMQ=60,60;MPOS=19;POPAF=7.30;TLOD=17.13 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:5,6:0.538:11:2,1:3,3:4,1,1,5 |
| 46 K03455 4923 . A G . . DP=11;ECNT=13;MBQ=0,33;MFRL=0,303;MMQ=60,60;MPOS=10;POPAF=7.30;TLOD=50.89 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,11:0.923:11:0,4:0,5:0,0,5,6 | 47 K03455 4923 . A G . . AS_SB_TABLE=0,0|6,6;DP=12;ECNT=13;MBQ=0,33;MFRL=0,301;MMQ=60,60;MPOS=10;POPAF=7.30;TLOD=53.71 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,12:0.929:12:0,4:0,6:0,0,6,6 |
| 47 K03455 4949 . G A . . DP=16;ECNT=13;MBQ=38,37;MFRL=281,279;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=40.32 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:6,10:0.647:16:2,3:2,6:0|1:4949_G_A:4949:3,3,4,6 | 48 K03455 4949 . G A . . AS_SB_TABLE=3,3|5,6;DP=17;ECNT=13;MBQ=38,37;MFRL=281,293;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=44.63 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:6,11:0.667:17:2,3:2,7:0|1:4949_G_A:4949:3,3,5,6 |
| 48 K03455 4952 . C T . . DP=18;ECNT=13;MBQ=25,37;MFRL=281,279;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=40.30 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:6,10:0.647:16:2,3:2,7:0|1:4949_G_A:4949:3,3,4,6 | 49 K03455 4952 . C T . . AS_SB_TABLE=3,3|5,6;DP=19;ECNT=13;MBQ=25,37;MFRL=281,293;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=44.61 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:6,11:0.667:17:2,3:2,8:0|1:4949_G_A:4949:3,3,5,6 |
| 49 K03455 4988 . T C . . DP=32;ECNT=13;MBQ=34,35;MFRL=261,290;MMQ=60,60;MPOS=38;POPAF=7.30;TLOD=23.96 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:24,8:0.258:32:9,4:12,3:12,12,4,4 | 50 K03455 4988 . T C . . AS_SB_TABLE=15,13|4,4;DP=36;ECNT=13;MBQ=34,35;MFRL=254,290;MMQ=60,60;MPOS=38;POPAF=7.30;TLOD=23.46 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:28,8:0.229:36:10,4:14,3:15,13,4,4 |
| 50 K03455 4991 . T C . . DP=32;ECNT=13;MBQ=33,20;MFRL=264,292;MMQ=60,60;MPOS=17;POPAF=7.30;TLOD=6.07 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:29,3:0.128:32:13,1:15,1:15,14,1,2 | 51 K03455 4991 . T C . . AS_SB_TABLE=16,15|3,2;DP=36;ECNT=13;MBQ=33,36;MFRL=264,238;MMQ=60,60;MPOS=17;POPAF=7.30;TLOD=12.68 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:31,5:0.171:36:13,2:17,2:16,15,3,2 |
| 51 K03455 4996 . AC GA . . DP=36;ECNT=13;MBQ=37,26;MFRL=264,256;MMQ=60,60;MPOS=21;POPAF=7.30;TLOD=11.76 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:29,6:0.181:35:10,2:12,3:14,15,3,3 | 52 K03455 4996 . AC GA . . AS_SB_TABLE=17,16|3,3;DP=40;ECNT=13;MBQ=34,26;MFRL=260,256;MMQ=60,60;MPOS=21;POPAF=7.30;TLOD=12.38 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:33,6:0.161:39:11,2:15,3:17,16,3,3 |
| 52 K03455 4997 . C T,A . . DP=36;ECNT=13;MBQ=20,20,38;MFRL=278,131,257;MMQ=60,60,60;MPOS=10,31;POPAF=7.30,7.30;TLOD=14.89,42.60 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:11,5,19:0.149,0.553:35:6,1,7:3,3,12:6,5,11,13 | 53 K03455 4997 . C T,A . . AS_SB_TABLE=6,5|4,3|10,10;DP=40;ECNT=13;MBQ=20,35,38;MFRL=278,158,261;MMQ=60,60,60;MPOS=14,31;POPAF=7.30,7.30;TLOD=21.98,46.07 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:11,7,20:0.187,0.536:38:6,2,7:3,4,13:6,5,14,13 |
| 53 K03455 5015 . A G . . DP=49;ECNT=13;MBQ=27,37;MFRL=245,251;MMQ=60,60;MPOS=30;POPAF=7.30;TLOD=126.23 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:14,32:0.721:46:7,8:6,23:6,8,14,18 | 54 K03455 5015 . A G . . AS_SB_TABLE=6,8|16,17;DP=49;ECNT=13;MBQ=27,37;MFRL=245,251;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=138.05 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:14,33:0.728:47:7,9:6,22:6,8,16,17 |
| 54 K03455 5018 . A G . . DP=49;ECNT=13;MBQ=33,20;MFRL=257,180;MMQ=60,60;MPOS=26;POPAF=7.30;TLOD=14.66 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:43,6:0.129:49:13,1:21,5:19,24,2,4 | 55 K03455 5018 . A G . . AS_SB_TABLE=18,23|4,4;DP=49;ECNT=13;MBQ=34,20;MFRL=260,194;MMQ=60,60;MPOS=33;POPAF=7.30;TLOD=21.59 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:41,8:0.173:49:13,2:22,5:18,23,4,4 |
| 55 K03455 5027 . G A . . DP=54;ECNT=13;MBQ=33,20;MFRL=254,158;MMQ=60,60;MPOS=30;POPAF=7.30;TLOD=16.84 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:46,7:0.148:53:15,1:25,6:0|1:5027_G_A:5027:19,27,2,5 | 56 K03455 5027 . G A . . AS_SB_TABLE=18,23|4,7;DP=52;ECNT=13;MBQ=37,20;MFRL=260,158;MMQ=60,60;MPOS=35;POPAF=7.30;TLOD=33.61 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:41,11:0.208:52:14,2:24,8:0|1:5027_G_A:5027:18,23,4,7 |
| 56 K03455 5036 . G A . . DP=53;ECNT=13;MBQ=32,20;MFRL=251,158;MMQ=60,60;MPOS=38;POPAF=7.30;TLOD=16.91 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:45,7:0.151:52:17,1:25,5:0|1:5027_G_A:5027:19,26,2,5 | 57 K03455 5036 . G A . . AS_SB_TABLE=18,22|4,7;DP=52;ECNT=13;MBQ=34,20;MFRL=259,158;MMQ=60,60;MPOS=38;POPAF=7.30;TLOD=33.71 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:40,11:0.212:51:13,2:26,8:0|1:5027_G_A:5027:18,22,4,7 |
| 57 K03455 5076 . A G . . DP=49;ECNT=29;MBQ=36,20;MFRL=260,210;MMQ=60,60;MPOS=54;POPAF=7.30;TLOD=15.53 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:43,6:0.151:49:12,1:28,5:0|1:5076_A_G:5076:11,32,0,6 | 58 K03455 5076 . A G . . AS_SB_TABLE=11,36|1,8;DP=56;ECNT=29;MBQ=37,20;MFRL=260,190;MMQ=60,60;MPOS=49;POPAF=7.30;TLOD=27.26 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:47,9:0.173:56:15,1:29,8:0|1:5076_A_G:5076:11,36,1,8 |
| 58 K03455 5098 . A G . . DP=55;ECNT=29;MBQ=20,32;MFRL=210,269;MMQ=60,60;MPOS=29;POPAF=7.30;TLOD=180.82 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:8,46:0.816:54:0,9:7,26:0,8,10,36 | 59 K03455 5098 . A G . . AS_SB_TABLE=1,11|10,40;DP=63;ECNT=29;MBQ=20,33;MFRL=198,269;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=196.26 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:12,50:0.785:62:0,11:10,27:1,11,10,40 |
| 59 K03455 5099 . C T . . DP=55;ECNT=29;MBQ=33,20;MFRL=269,210;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=22.21 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:46,8:0.183:54:8,1:31,6:0|1:5076_A_G:5076:10,36,0,8 | 60 K03455 5099 . C T . . AS_SB_TABLE=10,41|1,10;DP=63;ECNT=29;MBQ=34,20;MFRL=260,190;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=33.93 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:51,11:0.196:62:10,1:33,8:0|1:5076_A_G:5076:10,41,1,10 |
| 60 K03455 5121 . C T . . DP=55;ECNT=29;MBQ=20,20;MFRL=251,245;MMQ=60,60;MPOS=26;POPAF=7.30;TLOD=54.15 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:39,16:0.265:55:7,5:30,9:6,33,4,12 | 61 K03455 5121 . C T . . AS_SB_TABLE=7,39|4,13;DP=63;ECNT=29;MBQ=26,20;MFRL=246,260;MMQ=60,60;MPOS=30;POPAF=7.30;TLOD=57.26 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:46,17:0.250:63:8,6:34,9:7,39,4,13 |
| 61 K03455 5130 . TG CA . . DP=49;ECNT=29;MBQ=20,37;MFRL=205,251;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=145.65 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:14,35:0.739:49:4,4:8,29:3,11,3,32 | 62 K03455 5130 . TG CA . . AS_SB_TABLE=3,13|3,37;DP=56;ECNT=29;MBQ=27,37;MFRL=218,249;MMQ=60,60;MPOS=32;POPAF=7.30;TLOD=170.80 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:16,40:0.738:56:5,6:9,32:3,13,3,37 |
| 62 K03455 5131 . G A . . DP=49;ECNT=29;MBQ=0,20;MFRL=0,205;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=53.22 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,14:0.951:14:0,3:0,9:0,0,3,11 | 63 K03455 5131 . G A . . AS_SB_TABLE=0,1|3,13;DP=56;ECNT=29;MBQ=32,20;MFRL=206,216;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=56.78 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:1,16:0.946:17:0,4:1,9:0,1,3,13 |
| 63 K03455 5133 . T C . . DP=46;ECNT=29;MBQ=35,36;MFRL=285,219;MMQ=60,60;MPOS=34;POPAF=7.30;TLOD=31.79 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:36,10:0.251:46:6,1:26,8:0|1:5133_T_C:5133:5,31,0,10 | 64 K03455 5133 . T C . . AS_SB_TABLE=5,34|0,13;DP=52;ECNT=29;MBQ=33,33;MFRL=278,222;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=42.34 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:39,13:0.280:52:7,1:26,11:0|1:5133_T_C:5133:5,34,0,13 |
| 64 K03455 5137 . GG AG,AA . . DP=45;ECNT=29;MBQ=26,39,39;MFRL=205,219,309;MMQ=60,60,60;MPOS=36,37;POPAF=7.30,7.30;TLOD=32.04,80.27 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:14,10,21:0.246,0.487:45:4,1,3:9,8,16:3,11,1,30 | 65 K03455 5137 . GG AA,AG . . AS_SB_TABLE=3,13|1,21|0,13;DP=51;ECNT=29;MBQ=32,39,39;MFRL=218,320,222;MMQ=60,60,60;MPOS=34,39;POPAF=7.30,7.30;TLOD=86.50,42.93 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:16,22,13:0.452,0.274:51:5,4,1:9,17,10:3,13,1,34 |
| 65 K03455 5146 . AGG A . . DP=43;ECNT=29;MBQ=38,37;MFRL=278,219;MMQ=60,60;MPOS=45;POPAF=7.30;RPA=4,2;RU=G;STR;TLOD=32.02 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:33,10:0.261:43:6,1:24,9:0|1:5133_T_C:5133:4,29,0,10 | 66 K03455 5146 . AGG A . . AS_SB_TABLE=4,32|0,12;DP=48;ECNT=29;MBQ=37,37;MFRL=286,219;MMQ=60,60;MPOS=43;POPAF=7.30;RPA=4,2;RU=G;STR;TLOD=39.62 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:36,12:0.276:48:8,1:25,11:0|1:5133_T_C:5133:4,32,0,12 |
| 66 K03455 5147 . G A . . DP=43;ECNT=29;MBQ=20,38;MFRL=205,331;MMQ=60,60;MPOS=46;POPAF=7.30;TLOD=75.96 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:14,19:0.626:33:4,2:9,13:0|1:5147_G_A:5147:3,11,1,18 | 67 K03455 5147 . G A . . AS_SB_TABLE=3,12|1,20;DP=48;ECNT=29;MBQ=20,37;MFRL=229,331;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=83.42 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:15,21:0.640:36:5,3:9,14:0|1:5147_G_A:5147:3,12,1,20 |
| 67 K03455 5149 . G A . . DP=42;ECNT=29;MBQ=37,18;MFRL=254,64;MMQ=60,60;MPOS=13;POPAF=7.30;TLOD=4.70 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:40,2:0.049:42:6,0:28,1:3,37,1,1 | 68 K03455 5149 . G A . . AS_SB_TABLE=3,42|1,1;DP=47;ECNT=29;MBQ=36,18;MFRL=257,64;MMQ=60,60;MPOS=13;POPAF=7.30;TLOD=4.60 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:45,2:0.043:47:7,0:30,1:3,42,1,1 |
| 68 K03455 5153 . GGTTT G . . DP=40;ECNT=29;MBQ=34,37;MFRL=269,219;MMQ=60,60;MPOS=50;POPAF=7.30;TLOD=32.44 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:30,10:0.281:40:6,1:22,9:0|1:5133_T_C:5133:3,27,0,10 | 69 K03455 5153 . GGTTT G . . AS_SB_TABLE=3,28|0,12;DP=43;ECNT=29;MBQ=35,37;MFRL=278,219;MMQ=60,60;MPOS=50;POPAF=7.30;TLOD=40.38 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:31,12:0.309:43:7,1:22,11:0|1:5133_T_C:5133:3,28,0,12 |
| 69 K03455 5155 . T C . . DP=39;ECNT=29;MBQ=20,38;MFRL=181,315;MMQ=60,60;MPOS=56;POPAF=7.30;TLOD=63.73 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:13,16:0.608:29:4,2:8,13:0|1:5147_G_A:5147:3,10,0,16 | 70 K03455 5155 . T C . . AS_SB_TABLE=3,11|0,16;DP=42;ECNT=29;MBQ=27,38;MFRL=221,315;MMQ=60,60;MPOS=56;POPAF=7.30;TLOD=62.97 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:14,16:0.601:30:5,2:8,13:0|1:5147_G_A:5147:3,11,0,16 |
| 70 K03455 5156 . T A . . DP=39;ECNT=29;MBQ=37,33;MFRL=296,260;MMQ=60,60;MPOS=15;POPAF=7.30;TLOD=39.44 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:18,11:0.356:29:2,4:16,7:0|1:5156_T_A:5156:1,17,2,9 | 71 K03455 5156 . T A . . AS_SB_TABLE=1,17|2,10;DP=42;ECNT=29;MBQ=37,35;MFRL=296,269;MMQ=60,60;MPOS=15;POPAF=7.30;TLOD=43.10 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:18,12:0.365:30:2,5:16,7:0|1:5156_T_A:5156:1,17,2,10 |
| 71 K03455 5157 . T G,C . . DP=39;ECNT=29;MBQ=20,37,20;MFRL=260,315,64;MMQ=60,60,60;MPOS=56,5;POPAF=7.30,7.30;TLOD=63.79,5.70 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:11,16,2:0.591,0.064:29:4,2,0:7,14,2:2,9,1,17 | 72 K03455 5157 . T G,C . . AS_SB_TABLE=2,10|0,16|1,1;DP=42;ECNT=29;MBQ=28,37,20;MFRL=269,315,64;MMQ=60,60,60;MPOS=56,5;POPAF=7.30,7.30;TLOD=63.04,5.63 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:12,16,2:0.584,0.061:30:5,2,0:7,14,2:2,10,1,17 |
| 72 K03455 5169 . C T . . DP=29;ECNT=29;MBQ=38,32;MFRL=275,190;MMQ=60,60;MPOS=45;POPAF=7.30;TLOD=39.25 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:18,11:0.379:29:2,4:15,7:1,17,1,10 | 73 K03455 5169 . C T . . AS_SB_TABLE=1,19|1,10;DP=31;ECNT=29;MBQ=38,32;MFRL=275,190;MMQ=60,60;MPOS=45;POPAF=7.30;TLOD=37.40 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:20,11:0.355:31:2,4:17,7:1,19,1,10 |
| 73 K03455 5175 . A T . . DP=26;ECNT=29;MBQ=36,38;MFRL=222,293;MMQ=60,60;MPOS=55;POPAF=7.30;TLOD=52.80 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:13,13:0.481:26:3,2:9,11:0|1:5147_G_A:5147:0,13,1,12 | 74 K03455 5175 . A T . . AS_SB_TABLE=0,15|1,12;DP=28;ECNT=29;MBQ=28,38;MFRL=222,293;MMQ=60,60;MPOS=55;POPAF=7.30;TLOD=52.25 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:15,13:0.448:28:3,2:10,11:0|1:5147_G_A:5147:0,15,1,12 |
| 74 K03455 5177 . G C . . DP=25;ECNT=29;MBQ=37,37;MFRL=293,219;MMQ=60,60;MPOS=58;POPAF=7.30;TLOD=28.74 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:17,8:0.346:25:4,1:12,7:0|1:5133_T_C:5133:1,16,0,8 | 75 K03455 5177 . G C . . AS_SB_TABLE=1,16|0,10;DP=27;ECNT=29;MBQ=37,35;MFRL=293,219;MMQ=60,60;MPOS=52;POPAF=7.30;TLOD=36.84 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:17,10:0.393:27:4,1:12,9:0|1:5133_T_C:5133:1,16,0,10 |
| 75 K03455 5179 . CC AC,AA . . DP=24;ECNT=29;MBQ=38,34,38;MFRL=339,219,296;MMQ=60,60,60;MPOS=58,51;POPAF=7.30,7.30;TLOD=29.12,49.40 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:4,8,12:0.346,0.462:24:2,1,2:2,7,10:0,4,1,19 | 76 K03455 5179 . CC AA,AC . . AS_SB_TABLE=0,4|1,11|0,10;DP=26;ECNT=29;MBQ=38,38,34;MFRL=339,296,219;MMQ=60,60,60;MPOS=51,61;POPAF=7.30,7.30;TLOD=48.82,37.25 GT:AD:AF:DP:F1R2:F2R1:SB 0/1/2:4,12,10:0.429,0.393:26:2,2,1:2,10,7:0,4,1,21 |
| 76 K03455 5189 . G A . . DP=25;ECNT=29;MBQ=39,39;MFRL=222,296;MMQ=60,60;MPOS=41;POPAF=7.30;TLOD=48.64 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:13,12:0.462:25:4,2:9,10:1,12,1,11 | 77 K03455 5189 . G A . . AS_SB_TABLE=1,12|1,11;DP=25;ECNT=29;MBQ=39,39;MFRL=222,296;MMQ=60,60;MPOS=41;POPAF=7.30;TLOD=48.64 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:13,12:0.462:25:4,2:9,10:1,12,1,11 |
| 77 K03455 5190 . A G . . DP=25;ECNT=29;MBQ=39,20;MFRL=252,278;MMQ=60,60;MPOS=62;POPAF=7.30;TLOD=15.35 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:20,5:0.231:25:3,2:17,2:0|1:5156_T_A:5156:1,19,1,4 | 78 K03455 5190 . A G . . AS_SB_TABLE=1,19|1,4;DP=25;ECNT=29;MBQ=39,20;MFRL=252,278;MMQ=60,60;MPOS=62;POPAF=7.30;TLOD=15.35 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:20,5:0.231:25:3,2:17,2:0|1:5156_T_A:5156:1,19,1,4 |
| 78 K03455 5196 . T C . . DP=25;ECNT=29;MBQ=38,20;MFRL=246,339;MMQ=60,60;MPOS=55;POPAF=7.30;TLOD=6.08 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:21,4:0.191:25:3,3:18,1:1,20,1,3 | 79 K03455 5196 . T C . . AS_SB_TABLE=1,20|1,3;DP=25;ECNT=29;MBQ=38,20;MFRL=246,339;MMQ=60,60;MPOS=55;POPAF=7.30;TLOD=6.08 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:21,4:0.191:25:3,3:18,1:1,20,1,3 |
| 79 K03455 5220 . G A . . DP=23;ECNT=29;MBQ=37,37;MFRL=286,222;MMQ=60,60;MPOS=19;POPAF=7.30;TLOD=24.08 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:16,7:0.344:23:5,1:11,6:0|1:5220_G_A:5220:2,14,0,7 | 80 K03455 5220 . G A . . AS_SB_TABLE=2,14|0,7;DP=23;ECNT=29;MBQ=37,37;MFRL=286,222;MMQ=60,60;MPOS=25;POPAF=7.30;TLOD=24.08 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:16,7:0.344:23:5,1:11,6:0|1:5220_G_A:5220:2,14,0,7 |
| 80 K03455 5223 . T A . . DP=22;ECNT=29;MBQ=37,37;MFRL=257,278;MMQ=60,60;MPOS=29;POPAF=7.30;TLOD=17.15 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:17,5:0.269:22:2,3:14,2:0|1:5223_T_A:5223:1,16,1,4 | 81 K03455 5223 . T A . . AS_SB_TABLE=1,16|1,4;DP=22;ECNT=29;MBQ=37,37;MFRL=257,278;MMQ=60,60;MPOS=29;POPAF=7.30;TLOD=17.16 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:17,5:0.269:22:2,3:14,2:0|1:5223_T_A:5223:1,16,1,4 |
| 81 K03455 5226 . T C . . DP=22;ECNT=29;MBQ=34,35;MFRL=268,253;MMQ=60,60;MPOS=23;POPAF=7.30;TLOD=12.23 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:16,6:0.231:22:4,1:12,5:1,15,1,5 | 82 K03455 5226 . T C . . AS_SB_TABLE=1,15|1,5;DP=22;ECNT=29;MBQ=34,35;MFRL=268,253;MMQ=60,60;MPOS=23;POPAF=7.30;TLOD=12.23 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:16,6:0.231:22:4,1:12,5:1,15,1,5 |
| 82 K03455 5230 . T C . . DP=21;ECNT=29;MBQ=33,38;MFRL=275,278;MMQ=60,60;MPOS=22;POPAF=7.30;TLOD=17.08 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:16,5:0.281:21:2,3:13,2:0|1:5223_T_A:5223:1,15,1,4 | 83 K03455 5230 . T C . . AS_SB_TABLE=1,15|1,4;DP=21;ECNT=29;MBQ=33,38;MFRL=275,278;MMQ=60,60;MPOS=22;POPAF=7.30;TLOD=17.08 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:16,5:0.281:21:2,3:13,2:0|1:5223_T_A:5223:1,15,1,4 |
| 83 K03455 5233 . G A . . DP=16;ECNT=29;MBQ=38,38;MFRL=293,216;MMQ=60,60;MPOS=11;POPAF=7.30;TLOD=17.95 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:11,5:0.369:16:3,0:7,5:0|1:5220_G_A:5220:2,9,0,5 | 84 K03455 5233 . G A . . AS_SB_TABLE=2,9|0,5;DP=16;ECNT=29;MBQ=38,38;MFRL=293,216;MMQ=60,60;MPOS=17;POPAF=7.30;TLOD=17.95 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:11,5:0.369:16:3,0:7,5:0|1:5220_G_A:5220:2,9,0,5 |
| 84 K03455 5236 . A G . . DP=16;ECNT=29;MBQ=37,38;MFRL=216,293;MMQ=60,60;MPOS=14;POPAF=7.30;TLOD=40.42 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:5,11:0.631:16:0,4:5,6:0,5,2,9 | 85 K03455 5236 . A G . . AS_SB_TABLE=0,5|2,9;DP=16;ECNT=29;MBQ=37,38;MFRL=216,293;MMQ=60,60;MPOS=14;POPAF=7.30;TLOD=40.42 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:5,11:0.631:16:0,4:5,6:0,5,2,9 |
| 85 K03455 5240 . C T . . DP=15;ECNT=29;MBQ=37,37;MFRL=250,162;MMQ=60,60;MPOS=-1;POPAF=7.30;TLOD=9.14 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:12,3:0.250:15:3,0:8,3:2,10,0,3 | 86 K03455 5240 . C T . . AS_SB_TABLE=2,10|0,3;DP=15;ECNT=29;MBQ=37,37;MFRL=250,162;MMQ=60,60;MPOS=5;POPAF=7.30;TLOD=9.14 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:12,3:0.250:15:3,0:8,3:2,10,0,3 |
| 86 K03455 6902 . A C . . DP=1;ECNT=8;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=65;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 | 87 K03455 6822 . GT AC . . AS_SB_TABLE=0,0|2,2;DP=4;ECNT=1;MBQ=0,38;MFRL=0,117;MMQ=60,60;MPOS=55;POPAF=7.30;TLOD=7.34 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,4:0.750:4:0,0:0,4:0,0,2,2 |
| 87 K03455 6905 . A G . . DP=1;ECNT=8;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=62;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 | 88 K03455 6902 . A C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=65;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 |
| 88 K03455 6911 . T C . . DP=1;ECNT=8;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=56;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 | 89 K03455 6905 . A G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=62;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 |
| 89 K03455 6917 . G A . . DP=1;ECNT=8;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=50;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 | 90 K03455 6911 . T C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=56;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 |
| 90 K03455 6920 . G A . . DP=1;ECNT=8;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=47;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 | 91 K03455 6917 . G A . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=50;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 |
| 91 K03455 6923 . C T . . DP=1;ECNT=8;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=44;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 | 92 K03455 6920 . G A . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=47;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 |
| 92 K03455 6931 . C A . . DP=1;ECNT=8;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 | 93 K03455 6923 . C T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=44;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 |
| 93 K03455 6936 . C G . . DP=1;ECNT=8;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 | 94 K03455 6931 . C A . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=36;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 |
| 95 K03455 6936 . C G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,39;MFRL=0,162;MMQ=60,60;MPOS=31;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:6902_A_C:6902:0,0,0,1 | |
| 96 K03455 7141 . GAATCC G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,0;MFRL=0,310;MMQ=60,60;MPOS=50;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,0:0|1:7141_GAATCC_G:7141:0,0,0,1 | |
| 97 K03455 7149 . A G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,15;MFRL=0,310;MMQ=60,60;MPOS=7;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,0:0|1:7141_GAATCC_G:7141:0,0,0,1 | |
| 98 K03455 7151 . C G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,38;MFRL=0,310;MMQ=60,60;MPOS=9;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,1:0,0:0|1:7141_GAATCC_G:7141:0,0,0,1 | |
| 99 K03455 7154 . G T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,24;MFRL=0,310;MMQ=60,60;MPOS=12;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,1:0,0:0|1:7141_GAATCC_G:7141:0,0,0,1 | |
| 100 K03455 7156 . G T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,25;MFRL=0,310;MMQ=60,60;MPOS=14;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,1:0,0:0|1:7141_GAATCC_G:7141:0,0,0,1 | |
| 101 K03455 7163 . A C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=14;MBQ=0,13;MFRL=0,310;MMQ=60,60;MPOS=21;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:SB 0/1:0,1:0.667:1:0,0:0,0:0,0,0,1 | |
| 102 K03455 7372 . T C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=2;MBQ=0,34;MFRL=0,451;MMQ=60,60;MPOS=25;POPAF=7.30;TLOD=3.58 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7372_T_C:7372:0,0,0,1 | |
| 103 K03455 7392 . C T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=2;MBQ=0,32;MFRL=0,451;MMQ=60,60;MPOS=5;POPAF=7.30;TLOD=4.20 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7372_T_C:7372:0,0,0,1 | |
| 104 K03455 7441 . A ACCT . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=77;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 | |
| 105 K03455 7443 . A AGTG . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=82;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 | |
| 106 K03455 7449 . G A . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=91;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 | |
| 107 K03455 7452 . GGA G . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=94;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 | |
| 108 K03455 7455 . A ATG . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=95;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 | |
| 109 K03455 7457 . TGA T . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,39;MFRL=0,486;MMQ=60,60;MPOS=99;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 | |
| 110 K03455 7460 . CA C . . AS_SB_TABLE=0,0|0,0;DP=1;ECNT=23;MBQ=0,37;MFRL=0,486;MMQ=60,60;MPOS=100;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,1:0.667:1:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,1 | |
| 111 K03455 7468 . CC TA . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=107;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0|1:7441_A_ACCT:7441:0,0,0,2 | |
| 112 K03455 7478 . C T . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=117;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7441_A_ACCT:7441:0,0,0,2 | |
| 113 K03455 7491 . A T . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=118;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7441_A_ACCT:7441:0,0,0,2 | |
| 114 K03455 7494 . A G . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=115;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7441_A_ACCT:7441:0,0,0,2 | |
| 115 K03455 7508 . GA AG . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=101;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7441_A_ACCT:7441:0,0,0,2 | |
| 116 K03455 7541 . C CGA . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=68;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 | |
| 117 K03455 7542 . AGT A . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=65;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 | |
| 118 K03455 7548 . C A . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=61;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 | |
| 119 K03455 7555 . GA AT . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=54;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 | |
| 120 K03455 7560 . TC GT . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,38;MFRL=0,586;MMQ=60,50;MPOS=49;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 | |
| 121 K03455 7568 . T C . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=41;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 | |
| 122 K03455 7571 . T C . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=38;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 | |
| 123 K03455 7581 . C A . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=28;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 | |
| 124 K03455 7584 . T C . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,39;MFRL=0,586;MMQ=60,50;MPOS=25;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 | |
| 125 K03455 7603 . A AGGG . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,37;MFRL=0,586;MMQ=60,50;MPOS=6;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,2:0|1:7541_C_CGA:7541:0,0,0,2 | |
| 126 K03455 7604 . T G . . AS_SB_TABLE=0,0|0,0;DP=2;ECNT=23;MBQ=0,33;MFRL=0,586;MMQ=60,50;MPOS=2;POPAF=7.30;TLOD=8.70 GT:AD:AF:DP:F1R2:F2R1:PGT:PID:PS:SB 0|1:0,2:0.667:2:0,0:0,1:0|1:7541_C_CGA:7541:0,0,0,2 |