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comparison gemini_db_info.xml @ 0:720cbfb4190d draft

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Imported from capsule None
author iuc
date Mon, 25 Aug 2014 17:15:54 -0400
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children 93bb0cfacefb
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-1:000000000000 0:720cbfb4190d
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
2 <description>List the gemini database tables and columns</description>
3 <expand macro="requirements" />
4 <expand macro="version_command" />
5 <macros>
6 <import>gemini_macros.xml</import>
7 <token name="@BINARY@">db_info</token>
8 </macros>
9 <command>
10 <![CDATA[
11 gemini @BINARY@
12 "${ infile }" | tr -s ' ' '\t'
13 > "${ outfile }"
14 ]]>
15 </command>
16 <expand macro="stdio" />
17 <inputs>
18 <param name="infile" type="data" format="sqlite" label="GEMINI database" />
19 </inputs>
20 <outputs>
21 <data name="outfile" format="tabular" label="${tool.name} on ${on_string}" />
22 </outputs>
23 <tests>
24 <test>
25 </test>
26 </tests>
27 <help>
28 **What it does**
29
30 Because of the sheer number of annotations that are stored in gemini, there are admittedly too many columns to remember by rote.
31 If you can’t recall the name of particular column, just use the db_info tool. It will report all of the tables and all of the columns / types in each table.
32
33 @CITATION@
34 </help>
35 <expand macro="citations"/>
36 </tool>