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comparison gemini_annotate.xml @ 2:93bb0cfacefb draft

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author iuc
date Mon, 12 Jan 2015 15:31:50 -0500
parents 720cbfb4190d
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1:d3c4d0208bb2 2:93bb0cfacefb
27 ]]> 27 ]]>
28 28
29 </command> 29 </command>
30 <expand macro="stdio" /> 30 <expand macro="stdio" />
31 <inputs> 31 <inputs>
32 <param name="infile" type="data" format="sqlite" label="GEMINI database" /> 32 <expand macro="infile" />
33 <param name="annotate_source" type="data" format="bed" label="File containing the annotations in BED format" help="(-f)"/> 33 <param name="annotate_source" type="data" format="bed" label="File containing the annotations in BED format" help="(-f)"/>
34 34
35 <param name="column_name" size="20" type="text" value="" 35 <param name="column_name" size="20" type="text" value=""
36 label="The name of the column to be added to the variant table" help="(-c)"> 36 label="The name of the column to be added to the variant table" help="(-c)">
37 <sanitizer invalid_char=" "> 37 <sanitizer invalid_char=" ">
77 <when value="count"/> 77 <when value="count"/>
78 </conditional> 78 </conditional>
79 79
80 </inputs> 80 </inputs>
81 <outputs> 81 <outputs>
82 <data name="outfile" format="tabular" label="${tool.name} on ${on_string}" /> 82 <data name="outfile" format="tabular" />
83 </outputs> 83 </outputs>
84 <tests> 84 <tests>
85 <test> 85 <test>
86 </test> 86 </test>
87 </tests> 87 </tests>