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comparison gemini_comp_hets.xml @ 2:93bb0cfacefb draft

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Uploaded
author iuc
date Mon, 12 Jan 2015 15:31:50 -0500
parents 720cbfb4190d
children ba3abde6775b
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1:d3c4d0208bb2 2:93bb0cfacefb
24 > "${ outfile }" 24 > "${ outfile }"
25 ]]> 25 ]]>
26 </command> 26 </command>
27 <expand macro="stdio" /> 27 <expand macro="stdio" />
28 <inputs> 28 <inputs>
29 <param name="infile" type="data" format="sqlite" label="GEMINI database" /> 29 <expand macro="infile" />
30 <expand macro="add_header_column" /> 30 <expand macro="add_header_column" />
31 <expand macro="column_filter" /> 31 <expand macro="column_filter" />
32 <param name="only_affected" type="boolean" truevalue="--only-affected" falsevalue="" checked="False" 32 <param name="only_affected" type="boolean" truevalue="--only-affected" falsevalue="" checked="False"
33 label="Report solely those compund heterozygotes impacted a sample labeled as affected" help="(--only-affected)"/> 33 label="Report solely those compund heterozygotes impacted a sample labeled as affected" help="(--only-affected)"/>
34 <param name="ignore_phasing" type="boolean" truevalue="--ignore-phasing" falsevalue="" checked="False" 34 <param name="ignore_phasing" type="boolean" truevalue="--ignore-phasing" falsevalue="" checked="False"
35 label="Ignore phasing when screening for compound hets" help="Candidates are inherently putative. (--ignore-phasing)"/> 35 label="Ignore phasing when screening for compound hets" help="Candidates are inherently putative. (--ignore-phasing)"/>
36 <expand macro="filter" /> 36 <expand macro="filter" />
37 </inputs> 37 </inputs>
38 <outputs> 38 <outputs>
39 <data name="outfile" format="tabular" label="${tool.name} on ${on_string}" /> 39 <data name="outfile" format="tabular" />
40 </outputs> 40 </outputs>
41 <tests> 41 <tests>
42 <test> 42 <test>
43 </test> 43 </test>
44 </tests> 44 </tests>