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comparison gemini_macros.xml @ 4:ba3abde6775b draft default tip

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author iuc
date Thu, 15 Jan 2015 15:33:48 -0500
parents 93bb0cfacefb
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3:ed88ab9ead28 4:ba3abde6775b
86 </conditional> 86 </conditional>
87 </xml> 87 </xml>
88 88
89 <xml name="sanitize_query"> 89 <xml name="sanitize_query">
90 <sanitizer invalid_char=""> 90 <sanitizer invalid_char="">
91 <valid initial="string.printable"> 91 <valid initial="string.printable"/>
92 </valid>
93 </sanitizer> 92 </sanitizer>
94 </xml> 93 </xml>
94
95 <token name="@CMDLN_SQL_FILTER_FILTER_OPTION@">
96 #if str($filter.filter_selector) == 'yes' and $filter.filter:
97 #import pipes
98 --filter ${ pipes.quote( str( $filter.filter ) ) or "''" }
99 #end if
100 </token>
95 101
96 <xml name="min_sequence_depth"> 102 <xml name="min_sequence_depth">
97 <param name="d" type="integer" value="0" size="5" label="The minimum aligned sequence depth (genotype DP) required for each sample" 103 <param name="d" type="integer" value="0" size="5" label="The minimum aligned sequence depth (genotype DP) required for each sample"
98 help="default: 0 (-d)"> 104 help="default: 0 (-d)">
99 <validator type="in_range" min="0"/> 105 <validator type="in_range" min="0"/>