Mercurial > repos > iuc > gemini_actionable_mutations

comparison gemini_actionable_mutations.xml @ 5:643a9ad97f08 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 62ed732cba355e695181924a8ed4cce49ca21c59
author iuc
date Fri, 11 Jan 2019 17:49:17 -0500
parents 712aa8283200
children db47f4939381
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4:712aa8283200 5:643a9ad97f08
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@">
2 <description>Retrieve genes with actionable somatic mutations via COSMIC and DGIdb</description> 2 <description>Retrieve genes with actionable somatic mutations via COSMIC and DGIdb</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">actionable_mutations</token> 5 <token name="@BINARY@">actionable_mutations</token>
6 </macros> 6 </macros>
8 <expand macro="stdio" /> 8 <expand macro="stdio" />
9 <expand macro="version_command" /> 9 <expand macro="version_command" />
10 <command> 10 <command>
11 <![CDATA[ 11 <![CDATA[
12 gemini @BINARY@ 12 gemini @BINARY@
13 "${ infile }" | tr -s ' ' '\t' 13 '$infile' | tr -s ' ' '\t'
14 > "${ outfile }" 14 > '$outfile'
15 ]]> 15 ]]>
16 </command> 16 </command>
17 <inputs> 17 <inputs>
18 <expand macro="infile" /> 18 <expand macro="infile" />
19 </inputs> 19 </inputs>