Mercurial > repos > iuc > gemini_amend

comparison gemini_amend.xml @ 5:bff8fad3fb69 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 62ed732cba355e695181924a8ed4cce49ca21c59
author iuc
date Fri, 11 Jan 2019 17:44:47 -0500
parents a02cd62adb70
children 334e946cacd4
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4:a02cd62adb70 5:bff8fad3fb69
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@">
2 <description>Amend an already loaded GEMINI database.</description> 2 <description>Amend an already loaded GEMINI database.</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">amend</token> 5 <token name="@BINARY@">amend</token>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <expand macro="stdio" /> 8 <expand macro="stdio" />
9 <expand macro="version_command" /> 9 <expand macro="version_command" />
10 <command> 10 <command>
11 <![CDATA[ 11 <![CDATA[
12 cp "${ infile }" "${ outfile }" && 12 cp '$infile' '$outfile' &&
13 13
14 gemini @BINARY@ 14 gemini @BINARY@
15 $clear 15 $clear
16 --sample "${ ped }" 16 --sample '$ped'
17 17
18 "${ outfile }" 18 '$outfile'
19 ]]> 19 ]]>
20 </command> 20 </command>
21 <inputs> 21 <inputs>
22 22
23 <expand macro="infile" /> 23 <expand macro="infile" />