Mercurial > repos > iuc > gemini_comp_hets

comparison gemini_comp_hets.xml @ 4:62647e2637f6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:49:22 -0500
parents ed0b0677dcfe
children
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3:7cf9bc210044 4:62647e2637f6
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Identifying potential compound heterozygotes</description> 2 <description>Identifying potential compound heterozygotes</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">comp_hets</token> 5 <token name="@BINARY@">comp_hets</token>
6 </macros> 6 </macros>
60 <data name="outfile" format="tabular" /> 60 <data name="outfile" format="tabular" />
61 </outputs> 61 </outputs>
62 <tests> 62 <tests>
63 <test> 63 <test>
64 <param name="infile" value="gemini_comphets_input.db" ftype="gemini.sqlite" /> 64 <param name="infile" value="gemini_comphets_input.db" ftype="gemini.sqlite" />
65 <param name="report_selector" value="column_filter" /> 65 <conditional name="report">
66 <param name="columns" value="chrom,start,end,ref,alt,gene,impact" /> 66 <param name="report_selector" value="column_filter" />
67 <param name="columns" value="chrom,start,end,ref,alt,gene,impact" />
68 </conditional>
67 <param name="allow_unaffected" value="True" /> 69 <param name="allow_unaffected" value="True" />
68 <param name="max_priority" value="3" /> 70 <param name="max_priority" value="3" />
69 <output name="outfile" file="gemini_comphets_result.tabular" /> 71 <output name="outfile">
72 <assert_contents>
73 <has_line_matching expression="chrom&#009;start&#009;end&#009;.*gene.*" />
74 </assert_contents>
75 </output>
70 </test> 76 </test>
71 </tests> 77 </tests>
72 <help> 78 <help>
73 **What it does** 79 **What it does**
74 80