Mercurial > repos > iuc > gemini_db_info

comparison test-data/test-cache/gemini/data/cancer_gene_census.20140120.tsv @ 4:f3cc64057b4e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:41:01 -0500
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3:4c5f4e9b1931 4:f3cc64057b4e
1 ARHH "RAS homolog gene family, member H (TTF)" 399 4 4p13 yes NHL L Dom T BCL6
2 BCL5 B-cell CLL/lymphoma 5 603 17 17q22 yes CLL L Dom T MYC
3 BCL6 B-cell CLL/lymphoma 6 604 3 3q27 yes "NHL, CLL" L Dom "T, Mis" "IG loci, ZNFN1A1, LCP1, PIM1, TFRC, CIITA, NACA, HSPCB, HSPCA, HIST1H4I, IL21R, POU2AF1, ARHH, EIF4A2, SFRS3"
4 BCOR BCL6 corepressor 54880 X Xp11.4 yes "retinoblastoma, AML, APL (translocation)" Rec "F, N, S, T" RARA yes oculo-facio-cardio-dental genetic
5 CIITA "class II, major histocompatibility complex, transactivator" 4261 16 16p13 yes "PMBL, Hodgkin lymphoma" L Dom T "FLJ27352, CD274, CD273, RALGDS, RUNDC2A, C16orf75, BCL6"
6 EIF4A2 "eukaryotic translation initiation factor 4A, isoform 2" 1974 3 3q27.3 yes NHL L Dom T BCL6
7 HIST1H4I "histone 1, H4i (H4FM)" 8294 6 6p21.3 yes NHL L Dom T BCL6
8 HSPCA "heat shock 90kDa protein 1, alpha" 3320 14 14q32.31 yes NHL L Dom T BCL6
9 HSPCB "heat shock 90kDa protein 1, beta" 3326 6 6p12 yes NHL L Dom T BCL6
10 IGH@ immunoglobulin heavy locus 3492 14 14q32.33 yes "MM, Burkitt lymphoma, NHL, CLL, B-ALL, MALT, MLCLS" L Dom T "MYC, FGFR3,PAX5, IRTA1, IRF4, CCND1, BCL9, BCL8, BCL6, BCL2, BCL3, BCL10, BCL11A. LHX4, DDX6, NFKB2, PAFAH1B2, PCSK7, CRLF2"
11 IKZF1 IKAROS family zinc finger 1 10320 7 7p12.2 yes "ALL, DLBCL" L "Rec,Dom" "D,T" BCL6
12 IL21R interleukin 21 receptor 50615 16 16p11 yes NHL L Dom T BCL6
13 LCP1 lymphocyte cytosolic protein 1 (L-plastin) 3936 13 13q14.1-q14.3 yes NHL L Dom T BCL6
14 MYC v-myc myelocytomatosis viral oncogene homolog (avian) 4609 8 8q24.12-q24.13 yes "Burkitt lymphoma, amplified in other cancers, B-CLL" "L, E" Dom "A, T" "IGK@, BCL5, BCL7A , BTG1, TRA@, IGH@"
15 NACA nascent-polypeptide-associated complex alpha polypeptide 4666 12 12q23-q24.1 yes NHL L Dom T BCL6
16 PIM1 pim-1 oncogene 5292 6 6p21.2 yes NHL L Dom T BCL6
17 POU2AF1 "POU domain, class 2, associating factor 1 (OBF1)" 5450 11 11q23.1 yes NHL L Dom T BCL6
18 SFRS3 "splicing factor, arginine/serine-rich 3" 6428 6 6p21 yes follicular lymphoma L Dom T BCL6
19 TFRC "transferrin receptor (p90, CD71)" 7037 3 3q29 yes NHL L Dom T BCL6