Mercurial > repos > iuc > gemini_de_novo
comparison gemini_de_novo.xml @ 4:9db3e299b1c8 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author | iuc |
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date | Fri, 14 Dec 2018 12:59:25 -0500 |
parents | 4aabe53ecfe0 |
children |
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3:d5b01cc263be | 4:9db3e299b1c8 |
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1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> | 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1"> |
2 <description>Identifying potential de novo mutations</description> | 2 <description>Identifying potential de novo mutations</description> |
3 <macros> | 3 <macros> |
4 <import>gemini_macros.xml</import> | 4 <import>gemini_macros.xml</import> |
5 <token name="@BINARY@">de_novo</token> | 5 <token name="@BINARY@">de_novo</token> |
6 </macros> | 6 </macros> |
58 <data name="outfile" format="tabular" /> | 58 <data name="outfile" format="tabular" /> |
59 </outputs> | 59 </outputs> |
60 <tests> | 60 <tests> |
61 <test> | 61 <test> |
62 <param name="infile" value="gemini_de_novo_input.db" ftype="gemini.sqlite" /> | 62 <param name="infile" value="gemini_de_novo_input.db" ftype="gemini.sqlite" /> |
63 <param name="columns" value="gene,ref,alt,impact" /> | 63 <conditional name="report"> |
64 <output name="outfile" file="gemini_de_novo_result.tabular" /> | 64 <param name="report_selector" value="column_filter" /> |
65 <param name="columns" value="gene,ref,alt,impact" /> | |
66 </conditional> | |
67 <output name="outfile"> | |
68 <assert_contents> | |
69 <has_line_matching expression="gene	ref	alt	impact.*" /> | |
70 </assert_contents> | |
71 </output> | |
65 </test> | 72 </test> |
66 </tests> | 73 </tests> |
67 <help> | 74 <help> |
68 **What it does** | 75 **What it does** |
69 | 76 |