Mercurial > repos > iuc > gemini_de_novo

comparison gemini_de_novo.xml @ 4:9db3e299b1c8 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:59:25 -0500
parents 4aabe53ecfe0
children
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3:d5b01cc263be 4:9db3e299b1c8
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Identifying potential de novo mutations</description> 2 <description>Identifying potential de novo mutations</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">de_novo</token> 5 <token name="@BINARY@">de_novo</token>
6 </macros> 6 </macros>
58 <data name="outfile" format="tabular" /> 58 <data name="outfile" format="tabular" />
59 </outputs> 59 </outputs>
60 <tests> 60 <tests>
61 <test> 61 <test>
62 <param name="infile" value="gemini_de_novo_input.db" ftype="gemini.sqlite" /> 62 <param name="infile" value="gemini_de_novo_input.db" ftype="gemini.sqlite" />
63 <param name="columns" value="gene,ref,alt,impact" /> 63 <conditional name="report">
64 <output name="outfile" file="gemini_de_novo_result.tabular" /> 64 <param name="report_selector" value="column_filter" />
65 <param name="columns" value="gene,ref,alt,impact" />
66 </conditional>
67 <output name="outfile">
68 <assert_contents>
69 <has_line_matching expression="gene&#009;ref&#009;alt&#009;impact.*" />
70 </assert_contents>
71 </output>
65 </test> 72 </test>
66 </tests> 73 </tests>
67 <help> 74 <help>
68 **What it does** 75 **What it does**
69 76