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comparison gemini_dump.xml @ 4:96a2d270bf0f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:58:00 -0500
parents a32c298053e4
children
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3:40f85b45e472 4:96a2d270bf0f
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Extract data from the Gemini DB</description> 2 <description>Extract data from the Gemini DB</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">dump</token> 5 <token name="@BINARY@">dump</token>
6 </macros> 6 </macros>
32 <outputs> 32 <outputs>
33 <data name="outfile" format="tabular" /> 33 <data name="outfile" format="tabular" />
34 </outputs> 34 </outputs>
35 <tests> 35 <tests>
36 <test> 36 <test>
37 <param name="infile" value="gemini_comphets_input.db" ftype="gemini.sqlite" /> 37 <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
38 <param name="header" value="True" /> 38 <param name="header" value="True" />
39 <param name="report" value="--genotypes" /> 39 <param name="report" value="--genotypes" />
40 <output name="outfile" file="gemini_dump_result.tabular" /> 40 <output name="outfile">
41 <assert_contents>
42 <has_line_matching expression="chrom&#009;start&#009;end&#009;.*sample&#009;.*genotype.*" />
43 </assert_contents>
44 </output>
41 </test> 45 </test>
42 </tests> 46 </tests>
43 <help><![CDATA[ 47 <help><![CDATA[
44 **What it does** 48 **What it does**
45 49