Mercurial > repos > iuc > gemini_mendel_errors

diff gemini_mendel_errors.xml @ 4:00c2734b3bea draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:45:48 -0500
parents c5f100ce7da5
children
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--- a/gemini_mendel_errors.xml	Wed Oct 17 13:31:29 2018 -0400
+++ b/gemini_mendel_errors.xml	Fri Dec 14 12:45:48 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Identify candidate violations of Mendelian inheritance</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -60,8 +60,15 @@
     <tests>
         <test>
             <param name="infile" value="gemini_de_novo_input.db" ftype="gemini.sqlite" />
-            <param name="columns" value="gene,ref,alt,impact" />
-            <output name="outfile" file="gemini_mendel_errors_result.tabular" />
+            <conditional name="report">
+                <param name="report_selector" value="column_filter" />
+                <param name="columns" value="gene,ref,alt,impact" />
+            </conditional>
+            <output name="outfile">
+                <assert_contents>
+                    <has_line_matching expression="gene&#009;ref&#009;alt&#009;impact&#009;.*violation.*" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help>