Mercurial > repos > iuc > gemini_pathways
comparison test-data/util/README.rst @ 4:69b5327a1f88 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
| author | iuc |
|---|---|
| date | Fri, 14 Dec 2018 13:02:36 -0500 |
| parents | |
| children |
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| 3:6b09debcfc49 | 4:69b5327a1f88 |
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| 1 Prepare Gemini annotation files and test databases for tool tests | |
| 2 ================================================================= | |
| 3 | |
| 4 Each version of GEMINI is tied to a particular set of annotation files and | |
| 5 database version. | |
| 6 | |
| 7 The ``build-gemini-testdata.sh`` script in this folder should be used to | |
| 8 regenerate the annotation files and the test databases whenever the GEMINI | |
| 9 version required by the tool wrappers gets upgraded. | |
| 10 | |
| 11 The script requires a working GEMINI installation at the targeted version and | |
| 12 a folder with GEMINI's original annotation files, and can be executed with:: | |
| 13 | |
| 14 sh build-gemini-testdata.sh path/to/gemini/annotation/files | |
| 15 | |
| 16 It will regenerate the annotation files inside test-data/test-cache/gemini/data | |
| 17 and rebuild the *.db files in test-data. | |
| 18 | |
| 19 .. Note:: | |
| 20 | |
| 21 If the version of GEMINI that you are upgrading to uses a gemini-config.yaml | |
| 22 file that is different from the one found in test-data/test-cache you will | |
| 23 have to upgrade this file manually (make sure you leave the line | |
| 24 ``annotation_dir: gemini/data`` unchanged in the process). | |
| 25 |