Mercurial > repos > iuc > gemini_qc

comparison gemini_qc.xml @ 5:8414eecc3828 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 62ed732cba355e695181924a8ed4cce49ca21c59
author iuc
date Fri, 11 Jan 2019 17:40:28 -0500
parents 246ad1a7ff20
children 20f2ecf46dcb
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4:246ad1a7ff20 5:8414eecc3828
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@">
2 <description>Quality control tool</description> 2 <description>Quality control tool</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">qc</token> 5 <token name="@BINARY@">qc</token>
6 </macros> 6 </macros>
9 <expand macro="version_command" /> 9 <expand macro="version_command" />
10 <command> 10 <command>
11 <![CDATA[ 11 <![CDATA[
12 gemini @BINARY@ 12 gemini @BINARY@
13 --mode sex 13 --mode sex
14 --chrom "$chrom" 14 --chrom '$chrom'
15 15
16 "${ infile }" 16 '$infile'
17 > "${ outfile }" 17 > '$outfile'
18 ]]> 18 ]]>
19 </command> 19 </command>
20 <inputs> 20 <inputs>
21 <expand macro="infile" /> 21 <expand macro="infile" />
22 <param name="chrom" type="text" value="chrX" label="Which chromosome should the sex test be applied to?" help="(--chrom)"/> 22 <param name="chrom" type="text" value="chrX" label="Which chromosome should the sex test be applied to?" help="(--chrom)"/>