Mercurial > repos > iuc > gemini_query

comparison gemini_query.xml @ 4:7ca6716748c2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:51:59 -0500
parents 666f60a9331a
children cd00221d67cb
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3:666f60a9331a 4:7ca6716748c2
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Querying the GEMINI database</description> 2 <description>Querying the GEMINI database</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">query</token> 5 <token name="@BINARY@">query</token>
6 </macros> 6 </macros>
90 <outputs> 90 <outputs>
91 <data name="outfile" format="tabular" /> 91 <data name="outfile" format="tabular" />
92 </outputs> 92 </outputs>
93 <tests> 93 <tests>
94 <test> 94 <test>
95 <param name="infile" value="gemini_load_result.db" ftype="gemini.sqlite" /> 95 <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
96 <param name="q" value="select start from variants limit 10" /> 96 <param name="q" value="select chrom,start from variants limit 10" />
97 <output name="outfile" file="gemini_query_result.tabular" /> 97 <param name="header" value="True" />
98 <output name="outfile">
99 <assert_contents>
100 <has_line_matching expression="chrom&#009;start" />
101 </assert_contents>
102 </output>
98 </test> 103 </test>
99 </tests> 104 </tests>
100 <help> 105 <help>
101 <![CDATA[ 106 <![CDATA[
102 **What it does** 107 **What it does**