Mercurial > repos > iuc > gemini_query

comparison gemini_query.xml @ 8:77a1e60fd1de draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit f7bdf08922aaf4119aefe7041e754a69cf64aebd
author iuc
date Wed, 13 Jul 2022 15:22:01 +0000
parents da74170c55c7
children
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7:da74170c55c7 8:77a1e60fd1de
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@+galaxy1"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@+galaxy2">
2 <description>Querying the GEMINI database</description> 2 <description>Querying the GEMINI database</description>
3 <expand macro="bio_tools"/>
3 <macros> 4 <macros>
4 <import>gemini_macros.xml</import> 5 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">query</token> 6 <token name="@BINARY@">query</token>
6 7
7 <xml name="sorting"> 8 <xml name="sorting">
385 <param name="tumor_sample_id" value="test" /> 386 <param name="tumor_sample_id" value="test" />
386 </conditional> 387 </conditional>
387 </section> 388 </section>
388 <output name="outfile" file="gemini_query_as_maf_result.tabular" /> 389 <output name="outfile" file="gemini_query_as_maf_result.tabular" />
389 </test> 390 </test>
391 <test>
392 <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
393 <conditional name="query">
394 <param name="interface" value="basic" />
395 <repeat name="regions">
396 <param name="chrom" value="chr1"/>
397 <param name="start" value="0"/>
398 <param name="end" value="13327"/>
399 </repeat>
400 </conditional>
401 <output name="outfile" file="gemini_region_filter.tabular" />
402 </test>
390 </tests> 403 </tests>
391 <help> 404 <help>
392 <![CDATA[ 405 <![CDATA[
393 **What it does** 406 **What it does**
394 407