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comparison gemini_region.xml @ 4:601b70d10d92 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:44:11 -0500
parents 3ceab02d0d40
children
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3:33efe43c1dbb 4:601b70d10d92
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Extracting variants from specific regions or genes</description> 2 <description>Extracting variants from specific regions or genes</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">region</token> 5 <token name="@BINARY@">region</token>
6 </macros> 6 </macros>
59 <outputs> 59 <outputs>
60 <data name="outfile" format="tabular" /> 60 <data name="outfile" format="tabular" />
61 </outputs> 61 </outputs>
62 <tests> 62 <tests>
63 <test> 63 <test>
64 <param name="infile" value="gemini_burden_input.db" ftype="gemini.sqlite" /> 64 <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
65 <param name="region_selector" value="--reg" /> 65 <param name="region_selector" value="--reg" />
66 <param name="region" value="chr10:48000000-49000000" /> 66 <param name="region" value="chr3:187000000-187500000" />
67 <param name="columns" value="chrom,start,gene" /> 67 <param name="header" value="True" />
68 <output name="outfile" file="gemini_region_result.tabular" /> 68 <conditional name="report">
69 <param name="report_selector" value="column_filter" />
70 <param name="columns" value="chrom,start,gene" />
71 </conditional>
72 <output name="outfile">
73 <assert_contents>
74 <has_line_matching expression="chrom&#009;start&#009;gene.*" />
75 </assert_contents>
76 </output>
69 </test> 77 </test>
70 </tests> 78 </tests>
71 <help> 79 <help>
72 **What it does** 80 **What it does**
73 81