Mercurial > repos > iuc > gemini_roh

diff gemini_roh.xml @ 4:ce54eb6fd5f9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 13:04:54 -0500
parents 91b4db3e6df4
children d65ca2fa673b
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line diff
--- a/gemini_roh.xml	Wed Oct 17 13:29:29 2018 -0400
+++ b/gemini_roh.xml	Fri Dec 14 13:04:54 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Identifying runs of homozygosity</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -55,11 +55,15 @@
     </outputs>
     <tests>
         <test>
-            <param name="infile" value="gemini_burden_input.db" ftype="gemini.sqlite" />
+            <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
             <param name="min_snps" value="3" />
             <param name="min_size" value="10" />
             <param name="min_total_depth" value="0" />
-            <output name="outfile" file="gemini_roh_result.tabular" />
+            <output name="outfile">
+                <assert_contents>
+                    <has_line_matching expression="chrom&#009;start&#009;end&#009;.*run_length.*" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[