Mercurial > repos > iuc > gemini_set_somatic

comparison gemini_set_somatic.xml @ 4:7b031989ea12 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:53:10 -0500
parents 230c975e7759
children 991049484627
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3:ef9991a4a9a7 4:7b031989ea12
1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0"> 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
2 <description>Tag somatic mutations in a GEMINI database</description> 2 <description>Tag somatic mutations in a GEMINI database</description>
3 <macros> 3 <macros>
4 <import>gemini_macros.xml</import> 4 <import>gemini_macros.xml</import>
5 <token name="@BINARY@">set_somatic</token> 5 <token name="@BINARY@">set_somatic</token>
6 </macros> 6 </macros>
75 </outputs> 75 </outputs>
76 <tests> 76 <tests>
77 <test> 77 <test>
78 <!-- A very basic test with a nonsensical input db. The example 78 <!-- A very basic test with a nonsensical input db. The example
79 databases that would produce something meaningful are >100 Mbyte --> 79 databases that would produce something meaningful are >100 Mbyte -->
80 <param name="infile" value="gemini_amend_input.db" ftype="gemini.sqlite" /> 80 <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
81 <param name="min_somatic_score" value="5.65" /> 81 <param name="min_somatic_score" value="5.65" />
82 <output name="outfile" file="gemini_is_somatic_result.db" /> 82 <output name="outfile" file="gemini_is_somatic_result.db" />
83 </test> 83 </test>
84 </tests> 84 </tests>
85 <help> 85 <help>