Mercurial > repos > iuc > gemini_set_somatic

comparison gemini_macros.xml @ 8:7814e39409d1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit f7bdf08922aaf4119aefe7041e754a69cf64aebd
author iuc
date Wed, 13 Jul 2022 15:32:50 +0000
parents 991049484627
children
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7:e4e2128460e3 8:7814e39409d1
1 <macros> 1 <macros>
2 <!-- gemini version to be used --> 2 <!-- gemini version to be used -->
3 <token name="@VERSION@">0.20.1</token> 3 <token name="@VERSION@">0.20.1</token>
4 <!-- minimal annotation files version required by this version of gemini --> 4 <!-- minimal annotation files version required by this version of gemini -->
5 <token name="@DB_VERSION@">200</token> 5 <token name="@DB_VERSION@">200</token>
6
7 <xml name="bio_tools">
8 <xrefs>
9 <xref type="bio.tools">gemini</xref>
10 </xrefs>
11 </xml>
6 12
7 <xml name="requirements"> 13 <xml name="requirements">
8 <requirements> 14 <requirements>
9 <requirement type="package" version="@VERSION@">gemini</requirement> 15 <requirement type="package" version="@VERSION@">gemini</requirement>
10 <yield /> 16 <yield />
176 182
177 <xml name="region_filter"> 183 <xml name="region_filter">
178 <repeat name="regions" title="Region Filter" default="0" min="0" 184 <repeat name="regions" title="Region Filter" default="0" min="0"
179 help="Filter variant sites by their position in the genome. If multiple Region Filters are specified, all variants that fall in ONE of the regions are reported."> 185 help="Filter variant sites by their position in the genome. If multiple Region Filters are specified, all variants that fall in ONE of the regions are reported.">
180 <param name="chrom" type="text" label="Chromosome"> 186 <param name="chrom" type="text" label="Chromosome">
181 <validator type="expression" message="A chromosome identifier is required when specifying a region filter">value.strip()</validator> 187 <validator type="regex" message="A chromosome identifier is required when specifying a region filter. It should start with 'chr'">^chr[0-9a-zA-Z: _.-]+</validator>
182 </param> 188 </param>
183 <param name="start" type="text" label="Region Start"> 189 <param name="start" type="text" label="Region Start">
184 <validator type="expression" message="an integer number is required">not value or value.isdigit()</validator> 190 <validator type="expression" message="an integer number is required">not value or value.isdigit()</validator>
185 </param> 191 </param>
186 <param name="stop" type="text" label="Region End"> 192 <param name="stop" type="text" label="Region End">