Mercurial > repos > iuc > gemini_set_somatic

diff gemini_set_somatic.xml @ 5:991049484627 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 62ed732cba355e695181924a8ed4cce49ca21c59
author iuc
date Fri, 11 Jan 2019 17:47:44 -0500
parents 7b031989ea12
children 7814e39409d1
line wrap: on
line diff
--- a/gemini_set_somatic.xml	Fri Dec 14 12:53:10 2018 -0500
+++ b/gemini_set_somatic.xml	Fri Jan 11 17:47:44 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@">
     <description>Tag somatic mutations in a GEMINI database</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -9,7 +9,7 @@
     <expand macro="version_command" />
     <command>
 <![CDATA[
-        cp "${ infile }" "${ outfile }" &&
+        cp '$infile' '$outfile' &&
 
         gemini @BINARY@
 
@@ -50,9 +50,9 @@
         #end if
 
         #if str($chrom).strip():
-            --chrom "$chrom"
+            --chrom '$chrom'
         #end if 
-        "${ outfile }"
+        '$outfile'
 ]]>
     </command>
     <inputs>