Mercurial > repos > iuc > genebed_maf_to_fasta

annotate test-data/local/maf_indexes.loc @ 0:f24a9ff28d3c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ commit 17e2194066ca843f6b2391a9632ea9de67d39351"
author iuc
date Fri, 21 Aug 2020 15:10:13 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f24a9ff28d3c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ commit 17e2194066ca843f6b2391a9632ea9de67d39351"
iuc
parents:
diff changeset
1 #This is a sample file distributed with Galaxy that is used by some
f24a9ff28d3c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ commit 17e2194066ca843f6b2391a9632ea9de67d39351"
iuc
parents:
diff changeset
2 #alignment tools. The maf_index.loc file has this format (white space
f24a9ff28d3c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ commit 17e2194066ca843f6b2391a9632ea9de67d39351"
iuc
parents:
diff changeset
3 #characters are TAB characters):
f24a9ff28d3c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ commit 17e2194066ca843f6b2391a9632ea9de67d39351"
iuc
parents:
diff changeset
4 #
f24a9ff28d3c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ commit 17e2194066ca843f6b2391a9632ea9de67d39351"
iuc
parents:
diff changeset
5 #<Display_name UID> <indexed_for:build1,build2,build3> <exists_in_maf:build1,build2,build3> <Comma_Separated_List_of_Full_Paths_To_Files>
f24a9ff28d3c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ commit 17e2194066ca843f6b2391a9632ea9de67d39351"
iuc
parents:
diff changeset
6 #
f24a9ff28d3c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ commit 17e2194066ca843f6b2391a9632ea9de67d39351"
iuc
parents:
diff changeset
7 Test TEST hg38,eulFla1,mm10 hg38,eulFla1,mm10 ${__HERE__}/interval2maf-in1-1.maf,${__HERE__}/interval2maf-in1-2.maf