Mercurial > repos > iuc > genebed_maf_to_fasta

comparison macros.xml @ 0:f24a9ff28d3c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ commit 17e2194066ca843f6b2391a9632ea9de67d39351"
author iuc
date Fri, 21 Aug 2020 15:10:13 -0400
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children 020c78e91cc5
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-1:000000000000 0:f24a9ff28d3c
1 <macros>
2 <xml name="requirements">
3 <requirement type="package" version="0.8.9">bx-python</requirement>
4 <yield />
5 </xml>
6 <xml name="citations">
7 <citations>
8 <citation type="doi">10.1093/bioinformatics/btr398</citation>
9 </citations>
10 </xml>
11 <xml name="maf_source">
12 <conditional name="maf_source_type">
13 <param name="maf_source" type="select" label="MAF Source">
14 <option value="cached" selected="true">Locally Cached Alignments</option>
15 <option value="user">Alignments in Your History</option>
16 </param>
17 <when value="user">
18 <param format="maf" name="maf_file" label="Choose alignments" type="data">
19 <options>
20 <filter type="data_meta" ref="input1" key="dbkey" />
21 </options>
22 <validator type="dataset_ok_validator" />
23 </param>
24 <param name="species" type="select" display="checkboxes" multiple="true" label="Choose species" help="Select species to be included in the final alignment">
25 <options>
26 <filter type="data_meta" ref="maf_file" key="species" />
27 </options>
28 </param>
29 </when>
30 <when value="cached">
31 <param name="mafType" type="select" label="Choose alignments">
32 <options from_data_table="maf_indexes">
33 <column name="name" index="0"/>
34 <column name="value" index="1"/>
35 <column name="indexed_for" index="2"/>
36 <column name="exists_in_maf" index="3" />
37 <column name="path" index="4" />
38 <filter type="data_meta" ref="input1" key="dbkey" column="2" multiple="True" separator=","/>
39 <validator type="no_options" message="No alignments are available for the build associated with the selected interval file"/>
40 </options>
41 </param>
42 <param name="species" type="select" display="checkboxes" multiple="true" label="Choose species" help="Select species to be included in the final alignment">
43 <options from_data_table="maf_indexes">
44 <column name="value" index="3"/>
45 <filter type="multiple_splitter" column="3" separator=","/>
46 </options>
47 </param>
48 </when>
49 </conditional>
50 </xml>
51 </macros>