Mercurial > repos > iuc > genetrack

diff genetrack.xml @ 4:b41a4bb828a3 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genetrack commit 2772547f531819d3f6d892ed041fa39b82e3550f
author iuc
date Wed, 05 Jul 2017 11:56:54 -0400
parents df7ac50ade5d
children
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line diff
--- a/genetrack.xml	Sat Jan 21 14:41:43 2017 -0500
+++ b/genetrack.xml	Wed Jul 05 11:56:54 2017 -0400
@@ -5,18 +5,18 @@
         <import>genetrack_macros.xml</import>
     </macros>
     <expand macro="requirements" />
-    <command>
-        python $__tool_directory__/genetrack.py
-        --input_format $input_format_cond.input_format
-        #for $i in $input_format_cond.input:
-            --input "${i}" "${i.hid}"
-        #end for
-        --sigma $sigma
-        --exclusion $exclusion
-        --up_width $up_width
-        --down_width $down_width
-        --filter $filter
-    </command>
+    <command detect_errors="exit_code"><![CDATA[
+python '$__tool_directory__/genetrack.py'
+--input_format $input_format_cond.input_format
+#for $i in $input_format_cond.input:
+    --input '${i}' '${i.hid}'
+#end for
+--sigma $sigma
+--exclusion $exclusion
+--up_width $up_width
+--down_width $down_width
+--filter $filter
+    ]]></command>
     <inputs>
         <conditional name="input_format_cond">
             <param name="input_format" type="select" label="Format of files for conversion">