Mercurial > repos > iuc > genomescope

diff genomescope.xml @ 2:01210c4e9144 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genomescope commit 41cbd9e93c32d81132ad0ee4dfa606ea67446bb0
author iuc
date Thu, 18 Aug 2022 12:50:44 +0000
parents 3169a38c2656
children 460fad600dce
line wrap: on
line diff
--- a/genomescope.xml	Sat Jun 26 14:17:47 2021 +0000
+++ b/genomescope.xml	Thu Aug 18 12:50:44 2022 +0000
@@ -1,11 +1,11 @@
-<tool id="genomescope" name="GenomeScope" version="@VERSION@+galaxy@SUFFIX_VERSION@" profile="20.01">
+<tool id="genomescope" name="GenomeScope" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.01">
     <description>reference-free genome profiling</description>
     <macros>
-        <token name="@VERSION@">2.0</token>
-        <token name="@SUFFIX_VERSION@">1</token>
+        <token name="@TOOL_VERSION@">2.0</token>
+        <token name="@VERSION_SUFFIX@">2</token>
     </macros>
     <requirements>
-        <requirement type="package" version="@VERSION@">genomescope2</requirement>
+        <requirement type="package" version="@TOOL_VERSION@">genomescope2</requirement>
     </requirements>
     <version_command>genomescope2 --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
@@ -108,10 +108,26 @@
             <section name="advanced_options">
                 <param name="testing" value="true"/>
             </section>
-            <output name="linear_plot" file="genomescope-out1-1.png" ftype="png"/>
-            <output name="log_plot" file="genomescope-out1-2.png" ftype="png"/>
-            <output name="transformed_linear_plot" file="genomescope-out1-3.png" ftype="png"/>
-            <output name="transformed_log_plot" file="genomescope-out1-4.png" ftype="png" compare="sim_size"/>
+            <output name="linear_plot" ftype="png">
+                <assert_contents>
+                    <has_size value="223370" delta="6000"/>
+                </assert_contents>
+            </output>
+            <output name="log_plot" ftype="png">
+                <assert_contents>
+                    <has_size value="201425" delta="6000"/>
+                </assert_contents>
+            </output>
+            <output name="transformed_linear_plot" ftype="png">
+                <assert_contents>
+                    <has_size value="221442" delta="6000"/>
+                </assert_contents>
+            </output>
+            <output name="transformed_log_plot" ftype="png">
+                <assert_contents>
+                    <has_size value="210889" delta="6000"/>
+                </assert_contents>
+            </output>
             <output name="model" file="genomescope-out1-1.txt" ftype="txt" lines_diff="2"/>
             <output name="summary" file="genomescope-out1-2.txt" ftype="txt" lines_diff="2"/>
             <output name="progress" file="genomescope-out1-3.txt" ftype="txt" lines_diff="2"/>
@@ -129,22 +145,22 @@
             </section>
             <output name="linear_plot" ftype="png">
                 <assert_contents>
-                    <has_size value="223370" delta="300"/>
+                    <has_size value="223370" delta="6000"/>
                 </assert_contents>
             </output>
             <output name="log_plot" ftype="png">
                 <assert_contents>
-                    <has_size value="201425" delta="300"/>
+                    <has_size value="201425" delta="6000"/>
                 </assert_contents>
             </output>
             <output name="transformed_linear_plot" ftype="png">
                 <assert_contents>
-                    <has_size value="221442" delta="300"/>
+                    <has_size value="221442" delta="6000"/>
                 </assert_contents>
             </output>
             <output name="transformed_log_plot" ftype="png">
                 <assert_contents>
-                    <has_size value="210889" delta="300"/>
+                    <has_size value="210889" delta="6000"/>
                 </assert_contents>
             </output>
             <output name="summary" ftype="txt" lines_diff="2">
@@ -167,22 +183,22 @@
             </section>
             <output name="linear_plot" ftype="png">
                 <assert_contents>
-                    <has_size value="213366" delta="300"/>
+                    <has_size value="213366" delta="6000"/>
                 </assert_contents>
             </output>
             <output name="log_plot" ftype="png">
                 <assert_contents>
-                    <has_size value="218425" delta="300"/>
+                    <has_size value="218425" delta="6000"/>
                 </assert_contents>
             </output>
             <output name="transformed_linear_plot" ftype="png">
                 <assert_contents>
-                    <has_size value="217280" delta="300"/>
+                    <has_size value="217280" delta="6000"/>
                 </assert_contents>
             </output>
             <output name="transformed_log_plot" ftype="png">
                 <assert_contents>
-                    <has_size value="229021" delta="300"/>
+                    <has_size value="229021" delta="6000"/>
                 </assert_contents>
             </output>
             <output name="summary" ftype="txt" lines_diff="2">