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changeset 1:8b330a577046 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/getorganelle commit 2abcba81319a6f37dfd31270211bd2ab35104510
author iuc
date Wed, 28 Sep 2022 22:05:41 +0000
parents f4394bbdf433
children 06bcf65179fb
files get_organelle_from_reads.xml
diffstat 1 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/get_organelle_from_reads.xml	Mon Aug 22 09:59:03 2022 +0000
+++ b/get_organelle_from_reads.xml	Wed Sep 28 22:05:41 2022 +0000
@@ -21,7 +21,7 @@
                 #set ext = '.fastq.gz'
             #end if
             #set $in1 = $fastq_input.fastq_input1
-            #set $in1_name = re.sub('[^\w\-\s]', '_', str($fastq_input.fastq_input1.name)) + $ext
+            #set $in1_name = re.sub('[^\w\-\.]', '_', str($fastq_input.fastq_input1.name)) + $ext
             ln -s '$in1' '$in1_name' &&
         #else if str($fastq_input.fastq_input_selector) == 'paired':
             #if $fastq_input.fastq_input1.ext.endswith('.gz'):
@@ -29,8 +29,8 @@
             #end if
             #set $in1 = $fastq_input.fastq_input1
             #set $in2 = $fastq_input.fastq_input2
-            #set $in1_name = re.sub('[^\w\-\s\._]', '_', str($fastq_input.fastq_input1.name)) + $ext
-            #set $in2_name = re.sub('[^\w\-\s\._]', '_', str($fastq_input.fastq_input2.name)) + $ext
+            #set $in1_name = re.sub('[^\w\-\.]', '_', str($fastq_input.fastq_input1.name)) + $ext
+            #set $in2_name = re.sub('[^\w\-\.]', '_', str($fastq_input.fastq_input2.name)) + $ext
             ln -s '$in1' '$in1_name' &&
             ln -s '$in2' '$in2_name' &&
         #else if str($fastq_input.fastq_input_selector) == 'paired_collection':
@@ -39,8 +39,8 @@
             #end if
             #set $in1 = $fastq_input.paired_input.forward
             #set $in2 = $fastq_input.paired_input.reverse
-            #set $in1_name = re.sub('[^\w\-\s\._]', '_', str($fastq_input.paired_input.name)) + $ext
-            #set $in2_name = re.sub('[^\w\-\s\._]', '_', str("%s_%s" % ($fastq_input.paired_input.name, "R2"))) + $ext
+            #set $in1_name = re.sub('[^\w\-\.]', '_', str($fastq_input.paired_input.name)) + $ext
+            #set $in2_name = re.sub('[^\w\-\.]', '_', str("%s_%s" % ($fastq_input.paired_input.name, "R2"))) + $ext
             ln -s '$in1' '$in1_name' &&
             ln -s '$in2' '$in2_name' &&
         #end if