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comparison test-data/gffcompare_out2.stats @ 2:f99d7825a501 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit a5352fb7f073b0083b750c5cf7d283ebcc16b30d
author iuc
date Tue, 05 Feb 2019 15:51:44 -0500
parents 3c97c841a443
children 2bb86e2c417f
comparison
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1:c80cdc2eac6d 2:f99d7825a501
1 # gffcompare v0.9.8 | Command line was: 1 # gffcompare v0.10.6 | Command line was:
2 #gffcompare -r /tmp/tmp6wAQh6/files/000/dataset_668.dat -R -e 100 -d 100 /tmp/tmp6wAQh6/files/000/dataset_667.dat 2 #gffcompare -r /tmp/tmp7AvPf0/files/000/dataset_13.dat -R -T -e 100 -d 100 -p TCONS gffcompare_in4_gtf
3 # 3 #
4 4
5 #= Summary for dataset: /tmp/tmp6wAQh6/files/000/dataset_667.dat 5 #= Summary for dataset: gffcompare_in4_gtf
6 # Query mRNAs : 35 in 29 loci (15 multi-exon transcripts) 6 # Query mRNAs : 35 in 29 loci (15 multi-exon transcripts)
7 # (3 multi-transcript loci, ~1.2 transcripts per locus) 7 # (3 multi-transcript loci, ~1.2 transcripts per locus)
8 # Reference mRNAs : 20 in 7 loci (19 multi-exon) 8 # Reference mRNAs : 20 in 7 loci (19 multi-exon)
9 # Super-loci w/ reference transcripts: 6 9 # Super-loci w/ reference transcripts: 6
10 #-----------------| Sensitivity | Precision | 10 #-----------------| Sensitivity | Precision |
11 Base level: 74.7 | 60.7 | 11 Base level: 72.6 | 60.7 |
12 Exon level: 80.0 | 55.7 | 12 Exon level: 80.0 | 55.7 |
13 Intron level: 81.2 | 64.4 | 13 Intron level: 81.2 | 64.4 |
14 Intron chain level: 10.5 | 13.3 | 14 Intron chain level: 10.5 | 13.3 |
15 Transcript level: 10.0 | 5.7 | 15 Transcript level: 10.0 | 5.7 |
16 Locus level: 28.6 | 6.9 | 16 Locus level: 28.6 | 6.9 |
25 Novel introns: 28/87 ( 32.2%) 25 Novel introns: 28/87 ( 32.2%)
26 Missed loci: 0/7 ( 0.0%) 26 Missed loci: 0/7 ( 0.0%)
27 Novel loci: 15/29 ( 51.7%) 27 Novel loci: 15/29 ( 51.7%)
28 28
29 Total union super-loci across all input datasets: 21 29 Total union super-loci across all input datasets: 21
30 35 out of 35 consensus transcripts written in gffcmp.annotated.gtf (0 discarded as redundant)