--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gffcompare_out1.loci	Fri Apr 07 16:02:07 2017 -0400
@@ -0,0 +1,87 @@
+XLOC_000001	chr1[-]3204563-3661579	Xkr4|Xkr4	CUFF.13.1	-
+XLOC_000002	chr1[.]3111450-3111490	-	CUFF.1.1	-
+XLOC_000003	chr1[.]3111546-3111576	-	CUFF.3.1	-
+XLOC_000004	chr1[.]3174766-3174792	-	-	CUFF.1.1
+XLOC_000005	chr1[.]3187402-3187428	-	-	CUFF.3.1
+XLOC_000006	chr1[.]3188522-3188548	-	-	CUFF.5.1
+XLOC_000007	chr1[.]3189811-3190789	-	CUFF.29.1,CUFF.31.1,CUFF.33.1	CUFF.11.1
+XLOC_000008	chr1[.]3190859-3191434	-	-	CUFF.7.1
+XLOC_000009	chr1[.]3191513-3192077	-	CUFF.35.1,CUFF.37.1	CUFF.9.1
+XLOC_000010	chr1[.]3192251-3192336	-	-	CUFF.13.1
+XLOC_000011	chr1[.]3192442-3192494	-	CUFF.39.1	-
+XLOC_000012	chr1[.]3192551-3192629	-	CUFF.41.1	-
+XLOC_000013	chr1[.]3192650-3192676	-	-	CUFF.15.1
+XLOC_000014	chr1[.]3192732-3192811	-	CUFF.43.1	-
+XLOC_000015	chr1[.]3192941-3193042	-	CUFF.45.1	-
+XLOC_000016	chr1[.]3194186-3194226	-	CUFF.47.1	-
+XLOC_000017	chr1[.]3194303-3194329	-	CUFF.49.1	-
+XLOC_000018	chr1[.]3194707-3194733	-	-	CUFF.17.1
+XLOC_000019	chr1[.]3195084-3195110	-	CUFF.51.1	-
+XLOC_000020	chr1[.]3195451-3195477	-	CUFF.53.1	-
+XLOC_000021	chr1[.]3197090-3197116	-	CUFF.55.1	-
+XLOC_000022	chr1[.]3197247-3197273	-	CUFF.57.1	-
+XLOC_000023	chr1[.]3197347-3197373	-	CUFF.59.1	-
+XLOC_000024	chr1[.]3197426-3197452	-	-	CUFF.19.1
+XLOC_000025	chr1[.]3200023-3200191	-	CUFF.7.1	CUFF.23.1
+XLOC_000026	chr1[.]3200326-3200352	-	CUFF.5.1	-
+XLOC_000027	chr1[.]3200431-3200457	-	-	CUFF.21.1
+XLOC_000028	chr1[.]3201008-3201039	-	-	CUFF.26.1
+XLOC_000029	chr1[.]3201078-3201481	-	CUFF.9.1	CUFF.25.1
+XLOC_000030	chr1[.]3201597-3201666	-	-	CUFF.29.1
+XLOC_000031	chr1[.]3201673-3201699	-	CUFF.11.1	-
+XLOC_000032	chr1[.]3201726-3201809	-	-	CUFF.31.1
+XLOC_000033	chr1[.]3211522-3211561	-	-	CUFF.33.1
+XLOC_000034	chr1[.]3212214-3212292	-	CUFF.15.1	-
+XLOC_000035	chr1[.]3212368-3212439	-	CUFF.19.1	-
+XLOC_000036	chr1[.]3212718-3212801	-	-	CUFF.35.1
+XLOC_000037	chr1[.]3213096-3213242	-	CUFF.17.1	CUFF.37.1
+XLOC_000038	chr1[.]3240607-3240633	-	-	CUFF.39.1
+XLOC_000039	chr1[.]3242480-3242512	-	-	CUFF.41.1
+XLOC_000040	chr1[.]3242634-3242923	-	CUFF.25.1	-
+XLOC_000041	chr1[.]3242925-3243005	-	-	CUFF.43.1
+XLOC_000042	chr1[.]3243019-3243079	-	CUFF.21.1	-
+XLOC_000043	chr1[.]3243109-3243154	-	-	CUFF.45.1
+XLOC_000044	chr1[.]3243348-3243401	-	CUFF.23.1	-
+XLOC_000045	chr1[.]3254080-3254106	-	-	CUFF.47.1
+XLOC_000046	chr1[.]3256975-3257011	-	CUFF.27.1	-
+XLOC_000047	chr1[.]3277156-3277182	-	-	CUFF.49.1
+XLOC_000048	chr1[.]3277191-3277218	-	CUFF.61.1	-
+XLOC_000049	chr1[.]3277914-3278390	-	CUFF.63.1	CUFF.51.1
+XLOC_000050	chr1[.]3280118-3280144	-	-	CUFF.53.1
+XLOC_000051	chr1[.]3280499-3280525	-	-	CUFF.55.1
+XLOC_000052	chr1[.]3280687-3280741	-	CUFF.65.1	-
+XLOC_000053	chr1[.]3282505-3282531	-	-	CUFF.57.1
+XLOC_000054	chr1[.]3282651-3282677	-	-	CUFF.59.1
+XLOC_000055	chr1[.]3282761-3282832	-	-	CUFF.61.1
+XLOC_000056	chr1[.]3284967-3284993	-	-	CUFF.63.1
+XLOC_000057	chr1[.]3290489-3290553	-	CUFF.67.1	-
+XLOC_000058	chr1[.]3290799-3290859	-	-	CUFF.65.1
+XLOC_000059	chr1[.]3290920-3291273	-	CUFF.69.1,CUFF.71.1	CUFF.69.1
+XLOC_000060	chr1[.]3299444-3299664	-	CUFF.73.1	CUFF.67.1
+XLOC_000061	chr1[.]3299692-3299733	-	-	CUFF.71.1
+XLOC_000062	chr1[.]3300052-3300078	-	CUFF.75.1	-
+XLOC_000063	chr1[.]3307749-3307775	-	-	CUFF.73.1
+XLOC_000064	chr1[.]3318621-3318647	-	-	CUFF.75.1
+XLOC_000065	chr1[.]3319000-3319051	-	CUFF.77.1	-
+XLOC_000066	chr1[.]3330528-3330554	-	-	CUFF.77.1
+XLOC_000067	chr1[.]3351241-3351311	-	-	CUFF.79.1
+XLOC_000068	chr1[.]3355888-3356119	-	CUFF.79.1	CUFF.81.1
+XLOC_000069	chr1[.]3356181-3356225	-	-	CUFF.83.1
+XLOC_000070	chr1[.]3363077-3363176	-	-	CUFF.85.1
+XLOC_000071	chr1[.]3363215-3363278	-	CUFF.81.1	-
+XLOC_000072	chr1[.]3363388-3363446	-	-	CUFF.87.1
+XLOC_000073	chr1[.]3363754-3363849	-	CUFF.83.1	-
+XLOC_000074	chr1[.]3364872-3364919	-	-	CUFF.89.1
+XLOC_000075	chr1[.]3367136-3367162	-	CUFF.85.1	-
+XLOC_000076	chr1[.]3367211-3367237	-	-	CUFF.91.1
+XLOC_000077	chr1[.]3367334-3367382	-	CUFF.87.1	-
+XLOC_000078	chr1[.]3369581-3369607	-	-	CUFF.93.1
+XLOC_000079	chr1[.]3375002-3375028	-	-	CUFF.95.1
+XLOC_000080	chr1[.]3377212-3377262	-	CUFF.89.1	-
+XLOC_000081	chr1[.]3379889-3379915	-	-	CUFF.97.1
+XLOC_000082	chr1[.]3386740-3386836	-	-	CUFF.99.1
+XLOC_000083	chr1[.]3391326-3391352	-	CUFF.91.1	-
+XLOC_000084	chr1[.]3435842-3435880	-	CUFF.93.1	-
+XLOC_000085	chr1[.]3447762-3447788	-	CUFF.95.1	-
+XLOC_000086	chr1[.]3450907-3450965	-	CUFF.97.1	-
+XLOC_000087	chr1[.]3451052-3451109	-	CUFF.99.1	-