Mercurial > repos > iuc > gffcompare
diff test-data/gffcompare_out2.gtf @ 5:f99dd58de04f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
| author | iuc |
|---|---|
| date | Fri, 03 Feb 2023 10:57:30 +0000 |
| parents | 2bb86e2c417f |
| children |
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--- a/test-data/gffcompare_out2.gtf Thu Oct 17 03:01:26 2019 -0400 +++ b/test-data/gffcompare_out2.gtf Fri Feb 03 10:57:30 2023 +0000 @@ -1,16 +1,16 @@ -chr1 Cufflinks transcript 12 20 . + . transcript_id "TCONS_00000006"; gene_id "XLOC_000001"; oId "CUFF.3.1"; class_code "u"; tss_id "TSS1"; +chr1 Cufflinks transcript 12 20 . + . transcript_id "TCONS_00000006"; gene_id "XLOC_000001"; gene_name "CUFF.3"; oId "CUFF.3.1"; cmp_ref "CUFF.3.1"; class_code "="; tss_id "TSS1"; num_samples "1"; chr1 Cufflinks exon 12 20 . + . transcript_id "TCONS_00000006"; gene_id "XLOC_000001"; exon_number "1"; -chr1 Cufflinks transcript 32 40 . + . transcript_id "TCONS_00000001"; gene_id "XLOC_000002"; gene_name "Lypla1"; oId "CUFF.7.1"; cmp_ref "Lypla1"; class_code "c"; tss_id "TSS2"; +chr1 Cufflinks transcript 32 40 . + . transcript_id "TCONS_00000001"; gene_id "XLOC_000002"; oId "CUFF.7.1"; cmp_ref "CUFF.3.1"; class_code "p"; cmp_ref_gene "CUFF.3"; tss_id "TSS2"; num_samples "1"; chr1 Cufflinks exon 32 40 . + . transcript_id "TCONS_00000001"; gene_id "XLOC_000002"; exon_number "1"; -chr1 Cufflinks transcript 42 47 . + . transcript_id "TCONS_00000007"; gene_id "XLOC_000002"; gene_name "Lypla1"; oId "CUFF.7.1"; contained_in "TCONS_00000002"; cmp_ref "Lypla1"; class_code "c"; tss_id "TSS3"; -chr1 Cufflinks exon 42 47 . + . transcript_id "TCONS_00000007"; gene_id "XLOC_000002"; exon_number "1"; -chr1 Cufflinks transcript 42 50 . + . transcript_id "TCONS_00000002"; gene_id "XLOC_000002"; gene_name "Lypla1"; oId "CUFF.9.1"; cmp_ref "Lypla1"; class_code "c"; tss_id "TSS3"; -chr1 Cufflinks exon 42 50 . + . transcript_id "TCONS_00000002"; gene_id "XLOC_000002"; exon_number "1"; -chr1 Cufflinks transcript 52 60 . + . transcript_id "TCONS_00000003"; gene_id "XLOC_000003"; gene_name "Lypla1"; oId "CUFF.10.1"; cmp_ref "Lypla1"; class_code "p"; tss_id "TSS4"; -chr1 Cufflinks exon 52 60 . + . transcript_id "TCONS_00000003"; gene_id "XLOC_000003"; exon_number "1"; -chr1 Cufflinks transcript 2 10 . - . transcript_id "TCONS_00000004"; gene_id "XLOC_000004"; oId "CUFF.1.1"; class_code "u"; tss_id "TSS5"; -chr1 Cufflinks exon 2 10 . - . transcript_id "TCONS_00000004"; gene_id "XLOC_000004"; exon_number "1"; -chr1 Cufflinks transcript 15 20 . - . transcript_id "TCONS_00000005"; gene_id "XLOC_000005"; oId "CUFF.3.1"; class_code "u"; tss_id "TSS6"; -chr1 Cufflinks exon 15 20 . - . transcript_id "TCONS_00000005"; gene_id "XLOC_000005"; exon_number "1"; -chr1 Cufflinks transcript 22 30 . - . transcript_id "TCONS_00000008"; gene_id "XLOC_000006"; oId "CUFF.5.1"; class_code "u"; tss_id "TSS7"; -chr1 Cufflinks exon 22 30 . - . transcript_id "TCONS_00000008"; gene_id "XLOC_000006"; exon_number "1"; +chr1 Cufflinks transcript 42 47 . + . transcript_id "TCONS_00000007"; gene_id "XLOC_000003"; gene_name "CUFF.7"; oId "CUFF.7.1"; contained_in "TCONS_00000002"; cmp_ref "CUFF.7.1"; class_code "="; tss_id "TSS3"; num_samples "1"; +chr1 Cufflinks exon 42 47 . + . transcript_id "TCONS_00000007"; gene_id "XLOC_000003"; exon_number "1"; +chr1 Cufflinks transcript 42 50 . + . transcript_id "TCONS_00000002"; gene_id "XLOC_000003"; gene_name "CUFF.7"; oId "CUFF.9.1"; cmp_ref "CUFF.7.1"; class_code "k"; tss_id "TSS3"; num_samples "1"; +chr1 Cufflinks exon 42 50 . + . transcript_id "TCONS_00000002"; gene_id "XLOC_000003"; exon_number "1"; +chr1 Cufflinks transcript 52 60 . + . transcript_id "TCONS_00000003"; gene_id "XLOC_000004"; oId "CUFF.10.1"; cmp_ref "CUFF.7.1"; class_code "p"; cmp_ref_gene "CUFF.7"; tss_id "TSS4"; num_samples "1"; +chr1 Cufflinks exon 52 60 . + . transcript_id "TCONS_00000003"; gene_id "XLOC_000004"; exon_number "1"; +chr1 Cufflinks transcript 2 10 . - . transcript_id "TCONS_00000004"; gene_id "XLOC_000005"; gene_name "CUFF.1"; oId "CUFF.1.1"; cmp_ref "CUFF.1.1"; class_code "="; tss_id "TSS5"; num_samples "2"; +chr1 Cufflinks exon 2 10 . - . transcript_id "TCONS_00000004"; gene_id "XLOC_000005"; exon_number "1"; +chr1 Cufflinks transcript 15 20 . - . transcript_id "TCONS_00000005"; gene_id "XLOC_000006"; oId "CUFF.3.1"; cmp_ref "CUFF.3.1"; class_code "x"; cmp_ref_gene "CUFF.3"; tss_id "TSS6"; num_samples "1"; +chr1 Cufflinks exon 15 20 . - . transcript_id "TCONS_00000005"; gene_id "XLOC_000006"; exon_number "1"; +chr1 Cufflinks transcript 22 30 . - . transcript_id "TCONS_00000008"; gene_id "XLOC_000007"; gene_name "CUFF.5"; oId "CUFF.5.1"; cmp_ref "CUFF.5.1"; class_code "="; tss_id "TSS7"; num_samples "1"; +chr1 Cufflinks exon 22 30 . - . transcript_id "TCONS_00000008"; gene_id "XLOC_000007"; exon_number "1";